Results 21 - 40 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 119616 | 0.77 | 0.93516 |
Target: 5'- uUUUAGUACAUGAUcUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGUGCUAcAAACGAAAGcAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 11012 | 0.77 | 0.93516 |
Target: 5'- gUUUAGUACAUGAUcUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGUGCUAcAAACGAAAGcAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 119518 | 0.77 | 0.929596 |
Target: 5'- uUUUAGUACACGAUcUUUGCUUUUaUCg -3' miRNA: 3'- -AGAUCAUGUGCUAcAAACGAAAGcAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 120230 | 0.79 | 0.897469 |
Target: 5'- ----aUACACGAUcUUUGCUUUCGUCg -3' miRNA: 3'- agaucAUGUGCUAcAAACGAAAGCAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 11173 | 0.79 | 0.897469 |
Target: 5'- ----aUGCACGAUcUUUGCUUUCGUCg -3' miRNA: 3'- agaucAUGUGCUAcAAACGAAAGCAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 105091 | 0.81 | 0.793719 |
Target: 5'- uUUUAGUACACGAUcUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGUGCUAcAAACGAAAGcAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 10713 | 0.81 | 0.793719 |
Target: 5'- uUUUAGUACACaAUGUUUGCUUucaucuacgaUCGUCg -3' miRNA: 3'- -AGAUCAUGUGcUACAAACGAA----------AGCAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 42065 | 0.82 | 0.773486 |
Target: 5'- aUUUAGUACuCGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGuGCUAcAAACGAAAGCAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 53315 | 0.83 | 0.731291 |
Target: 5'- --cAGUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUGCUAcAAACGAAAGCAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 104956 | 0.83 | 0.731291 |
Target: 5'- --cAGUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUGCUAcAAACGAAAGCAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 53040 | 0.83 | 0.709522 |
Target: 5'- uUCUAGUACAUGAUcUUUGCUUUCaUCg -3' miRNA: 3'- -AGAUCAUGUGCUAcAAACGAAAGcAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 53123 | 0.85 | 0.631457 |
Target: 5'- --cAGUACAUGAUcUUUGCUUUCGUCg -3' miRNA: 3'- agaUCAUGUGCUAcAAACGAAAGCAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 52784 | 0.87 | 0.531502 |
Target: 5'- --cGGUACACGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUGCUAcAAACGAAAGCAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 105501 | 0.87 | 0.531502 |
Target: 5'- --cAGUACACGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUGCUAcAAACGAAAGCAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 105322 | 0.87 | 0.52069 |
Target: 5'- --aAGUACACaAUGUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUGcUACAAACGAAAGCAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 11034 | 0.87 | 0.509965 |
Target: 5'- cUCUAGUACuCGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGuGCUAcAAACGAAAGCAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 10707 | 0.87 | 0.509965 |
Target: 5'- cUCUAGUACuCGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGuGCUAcAAACGAAAGCAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 119602 | 0.89 | 0.437824 |
Target: 5'- --cAGUACACGAUcUUUGCUUUCGUCg -3' miRNA: 3'- agaUCAUGUGCUAcAAACGAAAGCAG- -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 105289 | 0.89 | 0.427996 |
Target: 5'- cUCUAGUACAUGAUcUUUGCUUUCGUa -3' miRNA: 3'- -AGAUCAUGUGCUAcAAACGAAAGCAg -5' |
|||||||
8536 | 3' | -44.4 | NC_002169.1 | + | 11442 | 0.9 | 0.390032 |
Target: 5'- -aUAGUACACGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agAUCAUGUGCUAcAAACGAAAGCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home