Results 21 - 40 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8536 | 5' | -43 | NC_002169.1 | + | 52932 | 0.82 | 0.824319 |
Target: 5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3' miRNA: 3'- -AGCUACUUUCGUUUCUAGUaCAUGau -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 105441 | 0.83 | 0.784516 |
Target: 5'- uUCGAcGAAAGCAAAGAUUGUGUAUg- -3' miRNA: 3'- -AGCUaCUUUCGUUUCUAGUACAUGau -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 119635 | 0.84 | 0.752812 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGau -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 52942 | 0.84 | 0.752812 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGau -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 11096 | 0.84 | 0.752812 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGau -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 10978 | 0.84 | 0.730984 |
Target: 5'- cUCGAcGAAAGCAAAcAUCGUGUACUAg -3' miRNA: 3'- -AGCUaCUUUCGUUUcUAGUACAUGAU- -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 11604 | 0.85 | 0.674755 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUAUUAu -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 53076 | 0.86 | 0.640388 |
Target: 5'- -gGAcGAAAGCAAAGAUCAUGUAUUGa -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 11204 | 0.87 | 0.605946 |
Target: 5'- -gGAcGAAAGCAAAGAUCAUGUAUUAa -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 10679 | 0.87 | 0.605946 |
Target: 5'- gUCGAUGAAAGCAAAGAUCGuUGUGg-- -3' miRNA: 3'- -AGCUACUUUCGUUUCUAGU-ACAUgau -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 105130 | 0.9 | 0.462341 |
Target: 5'- ----cGAAAGCAAAGAUCAUGUACUAg -3' miRNA: 3'- agcuaCUUUCGUUUCUAGUACAUGAU- -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 105660 | 0.9 | 0.451985 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACUGu -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 42032 | 0.91 | 0.421701 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 11602 | 0.91 | 0.421701 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACUAu -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 119580 | 0.91 | 0.402203 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 120199 | 0.91 | 0.402203 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 105115 | 0.91 | 0.392672 |
Target: 5'- -gGAcGAAAGCAAAGAUCAUGUACUGa -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 53156 | 0.91 | 0.392672 |
Target: 5'- -gGAcGAAAGCAAAGAUCAUGUACUGa -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 52698 | 0.92 | 0.364973 |
Target: 5'- -gGAcGAAAGCAAAGAUCAUGUACUAg -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5' |
|||||||
8536 | 5' | -43 | NC_002169.1 | + | 71670 | 0.92 | 0.364973 |
Target: 5'- -gGAcGAAAGCAAAGAUCAUGUACUAg -3' miRNA: 3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home