miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8536 5' -43 NC_002169.1 + 52932 0.82 0.824319
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUaCAUGau -5'
8536 5' -43 NC_002169.1 + 105441 0.83 0.784516
Target:  5'- uUCGAcGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGau -5'
8536 5' -43 NC_002169.1 + 119635 0.84 0.752812
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGau -5'
8536 5' -43 NC_002169.1 + 52942 0.84 0.752812
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGau -5'
8536 5' -43 NC_002169.1 + 11096 0.84 0.752812
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGau -5'
8536 5' -43 NC_002169.1 + 10978 0.84 0.730984
Target:  5'- cUCGAcGAAAGCAAAcAUCGUGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUcUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11604 0.85 0.674755
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 53076 0.86 0.640388
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUAUUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11204 0.87 0.605946
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUAUUAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 10679 0.87 0.605946
Target:  5'- gUCGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGU-ACAUgau -5'
8536 5' -43 NC_002169.1 + 105130 0.9 0.462341
Target:  5'- ----cGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- agcuaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 105660 0.9 0.451985
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUGu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 42032 0.91 0.421701
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11602 0.91 0.421701
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 119580 0.91 0.402203
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 120199 0.91 0.402203
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 105115 0.91 0.392672
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 53156 0.91 0.392672
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 52698 0.92 0.364973
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 71670 0.92 0.364973
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.