Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8538 | 3' | -44.3 | NC_002169.1 | + | 105410 | 0.71 | 0.998315 |
Target: 5'- --uAAUaCACGAUCUUUGCUUUCaUCc -3' miRNA: 3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 104971 | 0.71 | 0.997955 |
Target: 5'- -aAAAUGUAuCGuuucauagucaAUCUUUGCUUUCGUCc -3' miRNA: 3'- ucUUUACGU-GC-----------UAGAAACGAAAGCAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 31414 | 0.71 | 0.997533 |
Target: 5'- cGgcGUGCACGAUCUcgucgaUGgUUUUGUCg -3' miRNA: 3'- uCuuUACGUGCUAGAa-----ACgAAAGCAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 105692 | 0.72 | 0.997041 |
Target: 5'- --uAAUaCACGAUCUUUGCUUUC-UCg -3' miRNA: 3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 105598 | 0.72 | 0.99647 |
Target: 5'- ------aCACaAUCUUUGCUUUCGUCg -3' miRNA: 3'- ucuuuacGUGcUAGAAACGAAAGCAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 41999 | 0.72 | 0.995811 |
Target: 5'- --cAGUaCACGAUCUUUGCUUUCaUCu -3' miRNA: 3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 41875 | 0.72 | 0.995055 |
Target: 5'- ------aCACGAUCUUUGCUUUCaUCg -3' miRNA: 3'- ucuuuacGUGCUAGAAACGAAAGcAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 105094 | 0.73 | 0.992103 |
Target: 5'- --uAGUaCACGAUCUUUGCUUUCaUCg -3' miRNA: 3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 71637 | 0.73 | 0.990856 |
Target: 5'- --cAGUaCACGAUCUUUGCUUUCaUCg -3' miRNA: 3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 105286 | 0.75 | 0.974532 |
Target: 5'- --uAGUaCAUGAUCUUUGCUUUCGUa -3' miRNA: 3'- ucuUUAcGUGCUAGAAACGAAAGCAg -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 10818 | 0.76 | 0.948139 |
Target: 5'- --uAGUaCACGAUgUUUGCUUUCGUCg -3' miRNA: 3'- ucuUUAcGUGCUAgAAACGAAAGCAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 27553 | 0.77 | 0.943275 |
Target: 5'- gAGAuuUGCACGAUUg--GCgcgUCGUCa -3' miRNA: 3'- -UCUuuACGUGCUAGaaaCGaa-AGCAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 42061 | 0.77 | 0.932679 |
Target: 5'- -----aGUAcuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- ucuuuaCGU--GCUAGAAACGAAAGCAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 11038 | 0.77 | 0.932679 |
Target: 5'- -----aGUAcuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- ucuuuaCGU--GCUAGAAACGAAAGCAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 10711 | 0.77 | 0.932679 |
Target: 5'- -----aGUAcuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- ucuuuaCGU--GCUAGAAACGAAAGCAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 119328 | 0.79 | 0.886446 |
Target: 5'- -------gACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- ucuuuacgUGCUAGAAACGAAAGCAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 105205 | 0.79 | 0.878709 |
Target: 5'- --uAAUaCACGAUCUUUGCUUUUGUCc -3' miRNA: 3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 105036 | 0.79 | 0.870704 |
Target: 5'- ----uUGCAucagccuacuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- ucuuuACGU----------GCUAGAAACGAAAGCAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 52856 | 0.8 | 0.853915 |
Target: 5'- --uAGUaCAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5' |
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8538 | 3' | -44.3 | NC_002169.1 | + | 11363 | 0.8 | 0.853915 |
Target: 5'- --uAAUaCAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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