miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8538 5' -42.9 NC_002169.1 + 10870 0.81 0.880409
Target:  5'- uUGGACG-AAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGU-------------ACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 10971 0.82 0.819341
Target:  5'- -cGACGAAA-CAAAGAUCAUGUAUUAa -3'
miRNA:   3'- acCUGCUUUcGUUUCUAGUACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 11330 0.83 0.789394
Target:  5'- -cGACGAAAGCAAAGAUCGUGcAUUu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACaUAAu -5'
8538 5' -42.9 NC_002169.1 + 105128 0.84 0.757836
Target:  5'- --uACGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- accUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 42158 0.86 0.656978
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 105253 0.86 0.645479
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 71795 0.86 0.645479
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 104989 0.86 0.633966
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUGc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 105443 0.87 0.610947
Target:  5'- -cGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUAau -5'
8538 5' -42.9 NC_002169.1 + 119454 0.87 0.599462
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 10851 0.87 0.599462
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 42417 0.87 0.599462
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 53202 0.87 0.599462
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 104995 0.87 0.599462
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 42348 0.87 0.599462
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 11443 0.87 0.588007
Target:  5'- -cGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUAAU- -5'
8538 5' -42.9 NC_002169.1 + 53062 0.88 0.553925
Target:  5'- uUGGAUGAAAGCAAAGAUgAUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAgUACAUaau -5'
8538 5' -42.9 NC_002169.1 + 42029 0.89 0.49858
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUAau -5'
8538 5' -42.9 NC_002169.1 + 119484 0.9 0.466574
Target:  5'- uUGGACGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUAcAUAau -5'
8538 5' -42.9 NC_002169.1 + 42289 0.9 0.456143
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAuaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.