miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8540 3' -43.4 NC_002169.1 + 52898 0.82 0.815435
Target:  5'- uUUUAGUACaUC-AUCUUUGCUUUCAUCc -3'
miRNA:   3'- -AGAUCAUG-AGcUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 53315 0.84 0.721715
Target:  5'- --cAGUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 104956 0.84 0.721715
Target:  5'- --cAGUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 52662 0.85 0.654383
Target:  5'- uUUUAGUACaCGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAgAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 53123 0.86 0.620258
Target:  5'- --cAGUACaUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 105501 0.86 0.60889
Target:  5'- --cAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 52784 0.86 0.60889
Target:  5'- --cGGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 41999 0.88 0.519514
Target:  5'- --cAGUACaCGAUCUUUGCUUUCAUCu -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 105026 0.88 0.508665
Target:  5'- ----cUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGAGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 119602 0.88 0.508665
Target:  5'- --cAGUACaCGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 41772 0.89 0.487264
Target:  5'- ----aUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGAGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11638 0.89 0.476724
Target:  5'- uUCUAGUACaUGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAgAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 71637 0.89 0.466298
Target:  5'- --cAGUACaCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 11442 0.9 0.455992
Target:  5'- -aUAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 42192 0.9 0.455991
Target:  5'- -aUAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 119518 0.9 0.445809
Target:  5'- uUUUAGUACaCGAUCUUUGCUUUUAUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 42188 0.9 0.435755
Target:  5'- -gUAGUACaUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- agAUCAUGaGCUAGAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 10815 0.9 0.425832
Target:  5'- cUCUAGUACaCGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAgAAACGAAAGUAG- -5'
8540 3' -43.4 NC_002169.1 + 105289 0.91 0.416046
Target:  5'- cUCUAGUACaUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAg -5'
8540 3' -43.4 NC_002169.1 + 10935 0.91 0.396892
Target:  5'- cUUUGGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.