miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8540 5' -44.3 NC_002169.1 + 104995 0.74 0.979076
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 10851 0.74 0.979076
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 119356 0.75 0.973636
Target:  5'- -cGAUaAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGcUUUCGUUUCUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 11730 0.77 0.941144
Target:  5'- -cGAUGAAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGC-------------ACAUAAU- -5'
8540 5' -44.3 NC_002169.1 + 53062 0.77 0.930857
Target:  5'- uUGGAUGAAAGCAAAGAUgaUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAgcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 10976 0.77 0.925018
Target:  5'- -cGACGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 10743 0.79 0.891457
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 53282 0.79 0.891457
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 11070 0.79 0.891457
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUaau -5'
8540 5' -44.3 NC_002169.1 + 10677 0.79 0.883891
Target:  5'- -cGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGC-ACAUaau -5'
8540 5' -44.3 NC_002169.1 + 52817 0.79 0.883891
Target:  5'- -cGAUGAAAGCAAAGAUgGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAgCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 10870 0.8 0.822735
Target:  5'- uUGGACG-AAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGC-------------ACAUAAU- -5'
8540 5' -44.3 NC_002169.1 + 104797 0.81 0.794479
Target:  5'- uUGGACGAAAGCAAAGAUUGacUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCacAUAau -5'
8540 5' -44.3 NC_002169.1 + 105483 0.83 0.709609
Target:  5'- uUGGACGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 11330 0.84 0.630871
Target:  5'- -cGACGAAAGCAAAGAUCGUGcAUUu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACaUAAu -5'
8540 5' -44.3 NC_002169.1 + 104925 0.85 0.585647
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUAAU- -5'
8540 5' -44.3 NC_002169.1 + 42158 0.87 0.497694
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 71795 0.87 0.487089
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 105253 0.87 0.487089
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUaau -5'
8540 5' -44.3 NC_002169.1 + 53154 0.89 0.4259
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUaau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.