miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8541 5' -54.8 NC_002169.1 + 111815 0.66 0.923223
Target:  5'- cGUCGACGauuCUGCCGUugcGAUcGCGUCGu-- -3'
miRNA:   3'- -CGGCUGC---GACGGCG---UUA-CGCAGUucu -5'
8541 5' -54.8 NC_002169.1 + 116082 0.66 0.923223
Target:  5'- gGCCGucuCGCuUGCCGCGcgGUaUCGAa- -3'
miRNA:   3'- -CGGCu--GCG-ACGGCGUuaCGcAGUUcu -5'
8541 5' -54.8 NC_002169.1 + 55490 0.66 0.923223
Target:  5'- cGCCGcCGCUGUCGUcGU-CGUCAc-- -3'
miRNA:   3'- -CGGCuGCGACGGCGuUAcGCAGUucu -5'
8541 5' -54.8 NC_002169.1 + 79946 0.66 0.917527
Target:  5'- uUCGACGCUGCCGCug-GCc---AGAu -3'
miRNA:   3'- cGGCUGCGACGGCGuuaCGcaguUCU- -5'
8541 5' -54.8 NC_002169.1 + 80646 0.66 0.917527
Target:  5'- cGUCGACGCUGCUGCugcUGCu------ -3'
miRNA:   3'- -CGGCUGCGACGGCGuu-ACGcaguucu -5'
8541 5' -54.8 NC_002169.1 + 128130 0.66 0.917527
Target:  5'- uCCGAgGCUGUCGCGAagcgGCGUg---- -3'
miRNA:   3'- cGGCUgCGACGGCGUUa---CGCAguucu -5'
8541 5' -54.8 NC_002169.1 + 25083 0.67 0.892299
Target:  5'- uGUCGAUGUUGUucaGCGcgGCGgCGAGAg -3'
miRNA:   3'- -CGGCUGCGACGg--CGUuaCGCaGUUCU- -5'
8541 5' -54.8 NC_002169.1 + 82712 0.67 0.892299
Target:  5'- cGCCGcCGCaGCCGCAGcuUGCGaCGu-- -3'
miRNA:   3'- -CGGCuGCGaCGGCGUU--ACGCaGUucu -5'
8541 5' -54.8 NC_002169.1 + 30960 0.67 0.878259
Target:  5'- uGCUGAgGCUGCCGUugcUGCG-CAu-- -3'
miRNA:   3'- -CGGCUgCGACGGCGuu-ACGCaGUucu -5'
8541 5' -54.8 NC_002169.1 + 112282 0.68 0.839295
Target:  5'- cGCCGGCGaCUGCCGCcuGAgagGCGaUCu--- -3'
miRNA:   3'- -CGGCUGC-GACGGCG--UUa--CGC-AGuucu -5'
8541 5' -54.8 NC_002169.1 + 77907 0.68 0.839295
Target:  5'- uGCCG-CGCgucGCCGaCGAcGCGUCGAa- -3'
miRNA:   3'- -CGGCuGCGa--CGGC-GUUaCGCAGUUcu -5'
8541 5' -54.8 NC_002169.1 + 112247 0.68 0.839295
Target:  5'- cUCGGCGUaGCCGUGAUGUuugacuucGUCGAGGa -3'
miRNA:   3'- cGGCUGCGaCGGCGUUACG--------CAGUUCU- -5'
8541 5' -54.8 NC_002169.1 + 81538 0.68 0.839295
Target:  5'- aGCUGGCGCcGCUGUugcugGCG-CGAGAa -3'
miRNA:   3'- -CGGCUGCGaCGGCGuua--CGCaGUUCU- -5'
8541 5' -54.8 NC_002169.1 + 120904 0.68 0.836794
Target:  5'- uGCCGugGCUGCUGCucauccuccgccuuAAUGCG-CuuGGu -3'
miRNA:   3'- -CGGCugCGACGGCG--------------UUACGCaGuuCU- -5'
8541 5' -54.8 NC_002169.1 + 19270 0.69 0.813529
Target:  5'- -gCGGUGCUGCUGguGggcuacgGCGUCGAGAa -3'
miRNA:   3'- cgGCUGCGACGGCguUa------CGCAGUUCU- -5'
8541 5' -54.8 NC_002169.1 + 80755 0.69 0.786234
Target:  5'- aGCCGACgGCUGUCGCAAcUGaagauuacgauCGUCAAa- -3'
miRNA:   3'- -CGGCUG-CGACGGCGUU-AC-----------GCAGUUcu -5'
8541 5' -54.8 NC_002169.1 + 134295 0.71 0.707849
Target:  5'- aUCGACGCUGUCGUccuuGAUGCuuugCAGGAa -3'
miRNA:   3'- cGGCUGCGACGGCG----UUACGca--GUUCU- -5'
8541 5' -54.8 NC_002169.1 + 8304 0.74 0.512757
Target:  5'- cGCCGGCGUUGCCGCAcUGUugggCAccGGAg -3'
miRNA:   3'- -CGGCUGCGACGGCGUuACGca--GU--UCU- -5'
8541 5' -54.8 NC_002169.1 + 97075 0.77 0.375269
Target:  5'- gGUCGACGCUGCCG-AcgGUGUCGAcGAc -3'
miRNA:   3'- -CGGCUGCGACGGCgUuaCGCAGUU-CU- -5'
8541 5' -54.8 NC_002169.1 + 15840 1.11 0.002307
Target:  5'- cGCCGACGCUGCCGCAAUGCGUCAAGAu -3'
miRNA:   3'- -CGGCUGCGACGGCGUUACGCAGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.