miRNA: 3'- uAGUCUAGA-AGCuAGCUaUGGUUGCA- -5'
miRNA: 3'- -UAGUcuagaAGCUAGCUaUGGUUGCA- -5'
miRNA: 3'- -UAGUCUAGAAGCUAGCUAUGGUUGCA- -5'
Results 1 - 3 of 3 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 8542 | 5' | -47.3 | NC_002169.1 | + | 133988 | 0.67 | 0.999106 |
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Target: 5'- uUUAGAUUUaUCG-UCGAgACCAACGUc -3' miRNA: 3'- uAGUCUAGA-AGCuAGCUaUGGUUGCA- -5' |
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| 8542 | 5' | -47.3 | NC_002169.1 | + | 120011 | 0.67 | 0.998367 |
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Target: 5'- uGUCAaug--UCGAUCGAaACCAACGUc -3' miRNA: 3'- -UAGUcuagaAGCUAGCUaUGGUUGCA- -5' |
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| 8542 | 5' | -47.3 | NC_002169.1 | + | 15939 | 1.06 | 0.028207 |
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Target: 5'- cAUCAGAUCUUCGAUCGAUACCAACGUc -3' miRNA: 3'- -UAGUCUAGAAGCUAGCUAUGGUUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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