miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8543 3' -41.2 NC_002169.1 + 78418 0.67 1
Target:  5'- cACAGCugcuCAACAGuCuGCAGCAGCAc -3'
miRNA:   3'- uUGUUGuu--GUUGUU-GuUGUUGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 3700 0.68 1
Target:  5'- cGAUAAUuuuuGACGuuGACGACGACGACGAa -3'
miRNA:   3'- -UUGUUG----UUGUugUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 49266 0.68 1
Target:  5'- aAACAuCAACGACGGCGACGcCGuuuACAAu -3'
miRNA:   3'- -UUGUuGUUGUUGUUGUUGUuGU---UGUU- -5'
8543 3' -41.2 NC_002169.1 + 55106 0.68 1
Target:  5'- cACAACuaugauuACGACGACGuCGACGAUAAu -3'
miRNA:   3'- uUGUUGu------UGUUGUUGUuGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 80030 0.68 1
Target:  5'- aAACAACGucauCGACGAUcuuuucgcgGGCGGCAGCGAu -3'
miRNA:   3'- -UUGUUGUu---GUUGUUG---------UUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 79972 0.67 1
Target:  5'- -uCAACAGCGGCAACcgauCGcACGGCAAu -3'
miRNA:   3'- uuGUUGUUGUUGUUGuu--GU-UGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 1555 0.67 1
Target:  5'- uGGCggUGGCGGCggUGGCGGCGGCGc -3'
miRNA:   3'- -UUGuuGUUGUUGuuGUUGUUGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 80506 0.67 1
Target:  5'- -uCGACGAUuACGACAAUAAUGAUAAa -3'
miRNA:   3'- uuGUUGUUGuUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 92689 0.67 1
Target:  5'- uAGCAACuauuguuuCAGCAugAGCuACAACGAa -3'
miRNA:   3'- -UUGUUGuu------GUUGUugUUGuUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 39912 0.68 1
Target:  5'- uGGCGACGGCGuaaucauuGCGGCGGCAcucuACGACGc -3'
miRNA:   3'- -UUGUUGUUGU--------UGUUGUUGU----UGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 24747 0.68 1
Target:  5'- cAACAGCAACu-CGACGAaauaacuaacuuuguCGACGACAAu -3'
miRNA:   3'- -UUGUUGUUGuuGUUGUU---------------GUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 49626 0.68 1
Target:  5'- aGACAACAAUagagccaucaauuuuGACAAauucauCAACAGCGACAc -3'
miRNA:   3'- -UUGUUGUUG---------------UUGUU------GUUGUUGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 26191 0.67 1
Target:  5'- aGAUGGCAGC-GCAACGACGucgcCGGCGAa -3'
miRNA:   3'- -UUGUUGUUGuUGUUGUUGUu---GUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 2902 0.67 1
Target:  5'- gGACAGCAuccguuCAAgAACGAUcACGACGAa -3'
miRNA:   3'- -UUGUUGUu-----GUUgUUGUUGuUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 77759 0.67 1
Target:  5'- cGGCGACGcGCGGCAcgcgaugguGCAGCAcCAACGAg -3'
miRNA:   3'- -UUGUUGU-UGUUGU---------UGUUGUuGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 36430 0.67 1
Target:  5'- uACAACAACGuuACAcuacuACAAUAcguGCAGCAAg -3'
miRNA:   3'- uUGUUGUUGU--UGU-----UGUUGU---UGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 99811 0.67 1
Target:  5'- cGGCGACGAgGAUGAUuACGAUGACGAg -3'
miRNA:   3'- -UUGUUGUUgUUGUUGuUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 128808 0.67 1
Target:  5'- gGACGACGugAucguCGAauguCGACAACGGCAAa -3'
miRNA:   3'- -UUGUUGUugUu---GUU----GUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 78706 0.67 1
Target:  5'- -cCGACGACAGUGACAACGGauCAGCAu -3'
miRNA:   3'- uuGUUGUUGUUGUUGUUGUU--GUUGUu -5'
8543 3' -41.2 NC_002169.1 + 36258 0.67 1
Target:  5'- gGGCAACGGCAuCGACGAacCGACGugGc -3'
miRNA:   3'- -UUGUUGUUGUuGUUGUU--GUUGUugUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.