miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8543 3' -41.2 NC_002169.1 + 51399 0.66 1
Target:  5'- uGGCGAUuuuguacgaGACGACGGcCGACGACGACu- -3'
miRNA:   3'- -UUGUUG---------UUGUUGUU-GUUGUUGUUGuu -5'
8543 3' -41.2 NC_002169.1 + 56487 0.66 1
Target:  5'- aAACGGCGucuucgccaaACAucACAACAuuguCAACGACAAa -3'
miRNA:   3'- -UUGUUGU----------UGU--UGUUGUu---GUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 34626 0.66 1
Target:  5'- cACAACGuguauccguuuaGCGuCAACAGCAGCAcCAAa -3'
miRNA:   3'- uUGUUGU------------UGUuGUUGUUGUUGUuGUU- -5'
8543 3' -41.2 NC_002169.1 + 26703 0.66 1
Target:  5'- cGACAACGucgucGCAaacauuauGCAACAuuuCGACAGCAc -3'
miRNA:   3'- -UUGUUGU-----UGU--------UGUUGUu--GUUGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 1677 0.66 1
Target:  5'- cGACGACGucggugGCGACGGCGcCAGgAGCGAu -3'
miRNA:   3'- -UUGUUGU------UGUUGUUGUuGUUgUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 87441 0.66 1
Target:  5'- -cCAGCAG-AGCAACGGCAACuAUAAa -3'
miRNA:   3'- uuGUUGUUgUUGUUGUUGUUGuUGUU- -5'
8543 3' -41.2 NC_002169.1 + 16212 0.66 1
Target:  5'- uGACggUGuccACGACAGCAACggUGGCAu -3'
miRNA:   3'- -UUGuuGU---UGUUGUUGUUGuuGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 127691 0.66 1
Target:  5'- nACGACGAaAGCGGaucUAGCGACGACGAa -3'
miRNA:   3'- uUGUUGUUgUUGUU---GUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 70198 0.66 1
Target:  5'- uACGGCGAaaucguCGACGAgGGCAACAAg -3'
miRNA:   3'- uUGUUGUUguu---GUUGUUgUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 110249 0.66 1
Target:  5'- uGCGGCGuucacggccaaaaggGCGugAugAACGGCAGCGAa -3'
miRNA:   3'- uUGUUGU---------------UGUugUugUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 46035 0.66 1
Target:  5'- cGGCGACGagGCGAgAACgAGCGACGGCu- -3'
miRNA:   3'- -UUGUUGU--UGUUgUUG-UUGUUGUUGuu -5'
8543 3' -41.2 NC_002169.1 + 51092 0.66 1
Target:  5'- aGACcuauACAACcACAGCAGCAAgAGCc- -3'
miRNA:   3'- -UUGu---UGUUGuUGUUGUUGUUgUUGuu -5'
8543 3' -41.2 NC_002169.1 + 69181 0.66 1
Target:  5'- uACAaacGCAACGcCAGCGACGGCuACGu -3'
miRNA:   3'- uUGU---UGUUGUuGUUGUUGUUGuUGUu -5'
8543 3' -41.2 NC_002169.1 + 82877 0.66 1
Target:  5'- cAACGACGucGCAagcuGCGGCuGCGGCGGCGu -3'
miRNA:   3'- -UUGUUGU--UGU----UGUUGuUGUUGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 55631 0.66 1
Target:  5'- gAGCGACGACGgauaGCuuuuuguuguugucgAACGACAugAGCAAa -3'
miRNA:   3'- -UUGUUGUUGU----UG---------------UUGUUGUugUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 2159 0.66 1
Target:  5'- uACAACAACAAaauugggguacgcguCGACGACGccGCAAUAc -3'
miRNA:   3'- uUGUUGUUGUU---------------GUUGUUGU--UGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 114551 0.66 1
Target:  5'- cGACAAgAugGACAugAccguCAACAACAu -3'
miRNA:   3'- -UUGUUgUugUUGUugUu---GUUGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 49812 0.66 1
Target:  5'- cGGCGACGACAACAcccgucucgAUGugAAUAACGu -3'
miRNA:   3'- -UUGUUGUUGUUGU---------UGUugUUGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 36955 0.66 1
Target:  5'- aGGCAACugcACAGCAACgAAUAGcCGACGGg -3'
miRNA:   3'- -UUGUUGu--UGUUGUUG-UUGUU-GUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 1066 0.66 1
Target:  5'- cGACGACGguuCGACGGCGACGcgccGCuGCAAg -3'
miRNA:   3'- -UUGUUGUu--GUUGUUGUUGU----UGuUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.