miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8543 3' -41.2 NC_002169.1 + 1066 0.66 1
Target:  5'- cGACGACGguuCGACGGCGACGcgccGCuGCAAg -3'
miRNA:   3'- -UUGUUGUu--GUUGUUGUUGU----UGuUGUU- -5'
8543 3' -41.2 NC_002169.1 + 1285 0.84 0.810522
Target:  5'- aGACGACGACGACGaaagugGCAGCGACGGCGGu -3'
miRNA:   3'- -UUGUUGUUGUUGU------UGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 1293 0.76 0.994075
Target:  5'- aAACGAC--CGGCGACGGCGGCAGCGGa -3'
miRNA:   3'- -UUGUUGuuGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 1333 0.89 0.5828
Target:  5'- uGACGGCGGCGGCGGCGGCGGCGGCGGu -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 1555 0.67 1
Target:  5'- uGGCggUGGCGGCggUGGCGGCGGCGc -3'
miRNA:   3'- -UUGuuGUUGUUGuuGUUGUUGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 1677 0.66 1
Target:  5'- cGACGACGucggugGCGACGGCGcCAGgAGCGAu -3'
miRNA:   3'- -UUGUUGU------UGUUGUUGUuGUUgUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 2107 0.77 0.990502
Target:  5'- uGACAACGACAccaucgGCGGCGAUaAGCAACAAa -3'
miRNA:   3'- -UUGUUGUUGU------UGUUGUUG-UUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 2159 0.66 1
Target:  5'- uACAACAACAAaauugggguacgcguCGACGACGccGCAAUAc -3'
miRNA:   3'- uUGUUGUUGUU---------------GUUGUUGU--UGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 2234 0.89 0.5828
Target:  5'- uGACGACGACGACGACGAguACAGCGAa -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUguUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 2246 0.71 0.99997
Target:  5'- cGCGACAACAAUAGgAGCAcuuAUGACGAu -3'
miRNA:   3'- uUGUUGUUGUUGUUgUUGU---UGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 2902 0.67 1
Target:  5'- gGACAGCAuccguuCAAgAACGAUcACGACGAa -3'
miRNA:   3'- -UUGUUGUu-----GUUgUUGUUGuUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 3380 0.89 0.606346
Target:  5'- uGACAAUGACAAUGACGACGACGACGAc -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 3521 0.93 0.417
Target:  5'- cGACGAgGACGACGACGACGACGACAAu -3'
miRNA:   3'- -UUGUUgUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 3700 0.68 1
Target:  5'- cGAUAAUuuuuGACGuuGACGACGACGACGAa -3'
miRNA:   3'- -UUGUUG----UUGUugUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 3713 0.92 0.437533
Target:  5'- aAACGACAGgGACGACAACGACGACGAa -3'
miRNA:   3'- -UUGUUGUUgUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 3952 0.85 0.800277
Target:  5'- cAACGACAAUAACAAUAAUAAUAACGAc -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 4030 0.87 0.700579
Target:  5'- cGACGACGACGACGACGACAuuauacaaauuaACGACAAu -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGU------------UGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 4447 0.97 0.260954
Target:  5'- aGACGACGACGACGACGACGGCGGCGAc -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 4534 0.7 0.999978
Target:  5'- --aGAUGAUGACAAUGACAACAAUAAa -3'
miRNA:   3'- uugUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 4570 0.96 0.298941
Target:  5'- cGACGACGACAAUGACAACGACAACGAu -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.