miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8543 3' -41.2 NC_002169.1 + 123886 0.91 0.51361
Target:  5'- -uUAACGACGACGACGACGACGACGAu -3'
miRNA:   3'- uuGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 54952 0.94 0.359085
Target:  5'- cAACGACGACGACGACAAUGACAACGAu -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 116442 0.92 0.437533
Target:  5'- cAACAGCGgagGCGGCAGCAGCAGCAACAAa -3'
miRNA:   3'- -UUGUUGU---UGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 124930 0.92 0.448015
Target:  5'- gGGCGGCGGCGGCGGCGGCGGCGACAGa -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 106052 0.92 0.469387
Target:  5'- gAACAACAACAACAACAACAagACGACGc -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGU--UGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 7485 0.91 0.480267
Target:  5'- cAACAACAGCAGCAggagcaucaGCAGCAGCAGCAGg -3'
miRNA:   3'- -UUGUUGUUGUUGU---------UGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 49140 0.91 0.480267
Target:  5'- aGACAuacGCGACGACGACGACGACGACGAu -3'
miRNA:   3'- -UUGU---UGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 78749 0.91 0.491268
Target:  5'- aGACGACGACGACGACGACGACGAuCGAa -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUU-GUU- -5'
8543 3' -41.2 NC_002169.1 + 6671 0.91 0.502385
Target:  5'- -cCGACGACGACGACGACGACAACGu -3'
miRNA:   3'- uuGUUGUUGUUGUUGUUGUUGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 80474 0.95 0.349995
Target:  5'- aAACAACAuuaGCAGCAGCAGCAGCAGCAGc -3'
miRNA:   3'- -UUGUUGU---UGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 55333 0.96 0.307033
Target:  5'- uGACGACGACGACAGCGGCGGCGGCAu -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUu -5'
8543 3' -41.2 NC_002169.1 + 33178 0.96 0.29894
Target:  5'- cGACGACGACGACGACGAUAACGACGAu -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 33118 1 0.180488
Target:  5'- cGACGACGACGACGACGACGACGACAAc -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 120809 1 0.185804
Target:  5'- uAGCAACAACAACAACGACGACGGCGAc -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 24716 0.99 0.208465
Target:  5'- uAACGACGACGACGACGACGACGACGAg -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 109226 0.99 0.208465
Target:  5'- uAACGACGACGACGACGACAACGACGAc -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 108738 0.99 0.208465
Target:  5'- cGGCGACGACGACGACGACAACGACGAc -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 94231 0.98 0.240105
Target:  5'- cAGCAGCGGCAGCGGCAGCGGCGACAAc -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 135209 0.98 0.240105
Target:  5'- uGACAACGGCGACGACGGCGGCGACAAa -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5'
8543 3' -41.2 NC_002169.1 + 65288 0.98 0.253845
Target:  5'- cGACGACGACGACGACGACGGCGGCGAu -3'
miRNA:   3'- -UUGUUGUUGUUGUUGUUGUUGUUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.