miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8543 5' -46.8 NC_002169.1 + 58716 0.66 0.999898
Target:  5'- cGUCGUcGGCGCCGauaguaguugaUCGAGaaAUUGACg -3'
miRNA:   3'- aCAGCAcCUGUGGC-----------AGUUUa-UAACUG- -5'
8543 5' -46.8 NC_002169.1 + 109524 0.66 0.999898
Target:  5'- cUGUCGUaucuGcGCACCGUCGAcgGUAUcGAUg -3'
miRNA:   3'- -ACAGCA----CcUGUGGCAGUU--UAUAaCUG- -5'
8543 5' -46.8 NC_002169.1 + 43932 0.66 0.999898
Target:  5'- --cCGUGGugcuCAaaGUCAGcAUGUUGACg -3'
miRNA:   3'- acaGCACCu---GUggCAGUU-UAUAACUG- -5'
8543 5' -46.8 NC_002169.1 + 69545 0.66 0.999866
Target:  5'- uUGUCGUGGAgCAUCGUUuc-----GACg -3'
miRNA:   3'- -ACAGCACCU-GUGGCAGuuuauaaCUG- -5'
8543 5' -46.8 NC_002169.1 + 120879 0.66 0.999775
Target:  5'- cUGUgCGUGuucaaGACGCCGUCGG----UGACg -3'
miRNA:   3'- -ACA-GCAC-----CUGUGGCAGUUuauaACUG- -5'
8543 5' -46.8 NC_002169.1 + 118707 0.67 0.999537
Target:  5'- gGUCGagagcacGGACACCGUCGAAc------ -3'
miRNA:   3'- aCAGCa------CCUGUGGCAGUUUauaacug -5'
8543 5' -46.8 NC_002169.1 + 19346 0.67 0.999537
Target:  5'- aGcCGUcGACGCCGUCGAuc--UGACc -3'
miRNA:   3'- aCaGCAcCUGUGGCAGUUuauaACUG- -5'
8543 5' -46.8 NC_002169.1 + 123496 0.67 0.999537
Target:  5'- --aUGUGGGCACUGcuauacggCAAcUGUUGACg -3'
miRNA:   3'- acaGCACCUGUGGCa-------GUUuAUAACUG- -5'
8543 5' -46.8 NC_002169.1 + 22145 0.67 0.999106
Target:  5'- --aUGUGGACGCCGUCAu-------- -3'
miRNA:   3'- acaGCACCUGUGGCAGUuuauaacug -5'
8543 5' -46.8 NC_002169.1 + 28147 0.68 0.998367
Target:  5'- aGUCGUGGACACgG-CGAccg-UGAa -3'
miRNA:   3'- aCAGCACCUGUGgCaGUUuauaACUg -5'
8543 5' -46.8 NC_002169.1 + 48605 0.68 0.998027
Target:  5'- -uUUGUGGACAauCUGUCGGGUuugGACa -3'
miRNA:   3'- acAGCACCUGU--GGCAGUUUAuaaCUG- -5'
8543 5' -46.8 NC_002169.1 + 41773 0.69 0.996633
Target:  5'- aGUCGUGaagaaaucGACGCUGUCGA--AUUGAg -3'
miRNA:   3'- aCAGCAC--------CUGUGGCAGUUuaUAACUg -5'
8543 5' -46.8 NC_002169.1 + 96912 0.7 0.993602
Target:  5'- cGUCGUcGACACCGUCGGcagcGUcGACc -3'
miRNA:   3'- aCAGCAcCUGUGGCAGUUua--UAaCUG- -5'
8543 5' -46.8 NC_002169.1 + 81496 0.7 0.989994
Target:  5'- cUGUCGUGGACGuaGUCGcuguuuaGAUAUuUGAUg -3'
miRNA:   3'- -ACAGCACCUGUggCAGU-------UUAUA-ACUG- -5'
8543 5' -46.8 NC_002169.1 + 94146 0.72 0.978927
Target:  5'- aGUCGUGGAUgaaaACgGUCA--UAUUGAUu -3'
miRNA:   3'- aCAGCACCUG----UGgCAGUuuAUAACUG- -5'
8543 5' -46.8 NC_002169.1 + 34508 0.72 0.970652
Target:  5'- uUG-CGgcgGcGGCGCCGUCGccGAUAUUGACu -3'
miRNA:   3'- -ACaGCa--C-CUGUGGCAGU--UUAUAACUG- -5'
8543 5' -46.8 NC_002169.1 + 45789 0.76 0.894925
Target:  5'- gUGUUGauuagcguUGGugACCGUCAGuugGUUGACg -3'
miRNA:   3'- -ACAGC--------ACCugUGGCAGUUua-UAACUG- -5'
8543 5' -46.8 NC_002169.1 + 96394 0.79 0.762756
Target:  5'- gUGUCGUGGACGCCGUacaccucuacgCAAucGUUGAg -3'
miRNA:   3'- -ACAGCACCUGUGGCA-----------GUUuaUAACUg -5'
8543 5' -46.8 NC_002169.1 + 16060 1.12 0.013456
Target:  5'- cUGUCGUGGACACCGUCAAAUAUUGACg -3'
miRNA:   3'- -ACAGCACCUGUGGCAGUUUAUAACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.