miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8544 3' -53.9 NC_002169.1 + 95508 0.66 0.966071
Target:  5'- gACGUGAcuaacguCCGCGcguGGACG-ACGCGCcaUCCc -3'
miRNA:   3'- -UGCGCU-------GGCGC---UUUGCaUGUGCG--AGG- -5'
8544 3' -53.9 NC_002169.1 + 82862 0.66 0.965423
Target:  5'- cUGCGGCUGCGGcGGCGUucuuuaacucggcgGCGCGUuuuuucguuUCCg -3'
miRNA:   3'- uGCGCUGGCGCU-UUGCA--------------UGUGCG---------AGG- -5'
8544 3' -53.9 NC_002169.1 + 108281 0.66 0.963086
Target:  5'- aACGaauCGACCGCGcaacaaaaguaaGAACGU---CGCUCCu -3'
miRNA:   3'- -UGC---GCUGGCGC------------UUUGCAuguGCGAGG- -5'
8544 3' -53.9 NC_002169.1 + 83089 0.66 0.963086
Target:  5'- gACGCuauGACCGCacgcuccGAACGUG-ACGCUUCu -3'
miRNA:   3'- -UGCG---CUGGCGc------UUUGCAUgUGCGAGG- -5'
8544 3' -53.9 NC_002169.1 + 112473 0.66 0.959561
Target:  5'- aACGCGAUCGaaaGAAGCau-CGCGCaUUCg -3'
miRNA:   3'- -UGCGCUGGCg--CUUUGcauGUGCG-AGG- -5'
8544 3' -53.9 NC_002169.1 + 271 0.66 0.95581
Target:  5'- -aGCGGcaaagaguuucuCCGCGAAACuuggACGCGUUUCa -3'
miRNA:   3'- ugCGCU------------GGCGCUUUGca--UGUGCGAGG- -5'
8544 3' -53.9 NC_002169.1 + 54466 0.66 0.95581
Target:  5'- uCGCGACCGUGuccGGCG-AUAUGauuuCUCCa -3'
miRNA:   3'- uGCGCUGGCGCu--UUGCaUGUGC----GAGG- -5'
8544 3' -53.9 NC_002169.1 + 73785 0.66 0.947616
Target:  5'- aGCGCGAgcacgcucaUCGUGuuguUGUACACGUUCUc -3'
miRNA:   3'- -UGCGCU---------GGCGCuuu-GCAUGUGCGAGG- -5'
8544 3' -53.9 NC_002169.1 + 56611 0.67 0.943165
Target:  5'- aACGCGGgCGCc-GGCGuUGCAUGCUUUa -3'
miRNA:   3'- -UGCGCUgGCGcuUUGC-AUGUGCGAGG- -5'
8544 3' -53.9 NC_002169.1 + 110158 0.67 0.943165
Target:  5'- cACGcCGGCCGCGugGAGC--ACAUGC-CCg -3'
miRNA:   3'- -UGC-GCUGGCGC--UUUGcaUGUGCGaGG- -5'
8544 3' -53.9 NC_002169.1 + 22266 0.67 0.938476
Target:  5'- gGCGcCGAgCGCGuuuAAACGUaaACGCaGCUCUu -3'
miRNA:   3'- -UGC-GCUgGCGC---UUUGCA--UGUG-CGAGG- -5'
8544 3' -53.9 NC_002169.1 + 58232 0.68 0.905255
Target:  5'- gGCGUGG--GCGAAACGUGCGUGUUCa -3'
miRNA:   3'- -UGCGCUggCGCUUUGCAUGUGCGAGg -5'
8544 3' -53.9 NC_002169.1 + 57857 0.68 0.905255
Target:  5'- -gGCGACa--GAAGCGUGCACuGCcCCu -3'
miRNA:   3'- ugCGCUGgcgCUUUGCAUGUG-CGaGG- -5'
8544 3' -53.9 NC_002169.1 + 113585 0.68 0.898876
Target:  5'- cACGCGAaCGCaaucaacuuuGAAACGU-CGCGCUgCa -3'
miRNA:   3'- -UGCGCUgGCG----------CUUUGCAuGUGCGAgG- -5'
8544 3' -53.9 NC_002169.1 + 61110 0.68 0.892262
Target:  5'- uCGCG-CaGCGAGACGgugACGCGCUg- -3'
miRNA:   3'- uGCGCuGgCGCUUUGCa--UGUGCGAgg -5'
8544 3' -53.9 NC_002169.1 + 30844 0.69 0.885416
Target:  5'- uCGCGGUCGCGAcACG-ACACGUuggCCg -3'
miRNA:   3'- uGCGCUGGCGCUuUGCaUGUGCGa--GG- -5'
8544 3' -53.9 NC_002169.1 + 110550 0.69 0.885416
Target:  5'- uCGCcGCCGCGAAccACGUACuuUGUUUCg -3'
miRNA:   3'- uGCGcUGGCGCUU--UGCAUGu-GCGAGG- -5'
8544 3' -53.9 NC_002169.1 + 30690 0.69 0.878342
Target:  5'- gACG-GGCgGCGAAACGUACACuuggcaCUCg -3'
miRNA:   3'- -UGCgCUGgCGCUUUGCAUGUGc-----GAGg -5'
8544 3' -53.9 NC_002169.1 + 131322 0.69 0.855806
Target:  5'- uCGCGACCcuCGAgcAGCGUAgACuCUCCa -3'
miRNA:   3'- uGCGCUGGc-GCU--UUGCAUgUGcGAGG- -5'
8544 3' -53.9 NC_002169.1 + 43764 0.69 0.855806
Target:  5'- -aGCGGCC-CGAGcGCGUACAgaaUGCUCUu -3'
miRNA:   3'- ugCGCUGGcGCUU-UGCAUGU---GCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.