miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8544 5' -46.9 NC_002169.1 + 30921 0.66 0.999804
Target:  5'- -cGCUGUcg--GCGUgcaAGACGCGCg -3'
miRNA:   3'- cuCGACGcaaaUGCAaa-UUUGCGCGa -5'
8544 5' -46.9 NC_002169.1 + 113294 0.66 0.999483
Target:  5'- uGAGCUGC---UACGUggacgcGACGCGUc -3'
miRNA:   3'- -CUCGACGcaaAUGCAaau---UUGCGCGa -5'
8544 5' -46.9 NC_002169.1 + 129859 0.66 0.999483
Target:  5'- uGAGCaGCGgUUGCGU---GAgGCGCa -3'
miRNA:   3'- -CUCGaCGCaAAUGCAaauUUgCGCGa -5'
8544 5' -46.9 NC_002169.1 + 22228 0.66 0.999483
Target:  5'- gGAGgaGCGUgUACGUUUcgcgguCGCGUUc -3'
miRNA:   3'- -CUCgaCGCAaAUGCAAAuuu---GCGCGA- -5'
8544 5' -46.9 NC_002169.1 + 103921 0.67 0.999353
Target:  5'- cGGCUGCGUUcuCGUUUccAC-CGCUg -3'
miRNA:   3'- cUCGACGCAAauGCAAAuuUGcGCGA- -5'
8544 5' -46.9 NC_002169.1 + 82859 0.67 0.998984
Target:  5'- cGGCUGCGgcgGCGUUcuuUAAcucggcgGCGCGUUu -3'
miRNA:   3'- cUCGACGCaaaUGCAA---AUU-------UGCGCGA- -5'
8544 5' -46.9 NC_002169.1 + 113229 0.67 0.998778
Target:  5'- aGGCUGCGaccgggucACGUgaAAACGUGCa -3'
miRNA:   3'- cUCGACGCaaa-----UGCAaaUUUGCGCGa -5'
8544 5' -46.9 NC_002169.1 + 22261 0.67 0.998778
Target:  5'- cGAGC-GCGUUUaaACGU--AAACGCaGCUc -3'
miRNA:   3'- -CUCGaCGCAAA--UGCAaaUUUGCG-CGA- -5'
8544 5' -46.9 NC_002169.1 + 134386 0.68 0.998509
Target:  5'- uGGGCgGCGggcUGgGaUUGAGCGCGCa -3'
miRNA:   3'- -CUCGaCGCaa-AUgCaAAUUUGCGCGa -5'
8544 5' -46.9 NC_002169.1 + 95319 0.71 0.977221
Target:  5'- uGAGUUGCGag-AUGUUggGAugGCGCg -3'
miRNA:   3'- -CUCGACGCaaaUGCAAa-UUugCGCGa -5'
8544 5' -46.9 NC_002169.1 + 22098 1.08 0.019704
Target:  5'- aGAGCUGCGUUUACGUUUAAACGCGCUc -3'
miRNA:   3'- -CUCGACGCAAAUGCAAAUUUGCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.