Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8545 | 3' | -55.3 | NC_002169.1 | + | 22520 | 0.69 | 0.814926 |
Target: 5'- uUUCCGGCcGGCaCGUGCUG-GCCGAgCa -3' miRNA: 3'- -AGGGCUGcUUG-GUAUGACgCGGCUgG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 1089 | 0.69 | 0.806163 |
Target: 5'- cUCCCGAUGGAguugcccgauuCCAUuaccacGCUGaCGgCGGCCa -3' miRNA: 3'- -AGGGCUGCUU-----------GGUA------UGAC-GCgGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 55975 | 0.69 | 0.788176 |
Target: 5'- -aCCGGCGuuauGCCGUGC-GUGUCGGCa -3' miRNA: 3'- agGGCUGCu---UGGUAUGaCGCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 110339 | 0.69 | 0.797244 |
Target: 5'- aCuuGACGuacACCGUAUUGuUGCUGACUg -3' miRNA: 3'- aGggCUGCu--UGGUAUGAC-GCGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 26102 | 0.69 | 0.814926 |
Target: 5'- -aCgGcACGGACgAUGCgUGCGCCGGCg -3' miRNA: 3'- agGgC-UGCUUGgUAUG-ACGCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 78032 | 0.69 | 0.796344 |
Target: 5'- gCCCGACGAacgcuucgacgcgACCucgaAUACgugcGUGCCGAUCc -3' miRNA: 3'- aGGGCUGCU-------------UGG----UAUGa---CGCGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 6719 | 0.71 | 0.711338 |
Target: 5'- cUCCUGAUGaAACUAcUAUUGcCGCCGACg -3' miRNA: 3'- -AGGGCUGC-UUGGU-AUGAC-GCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 26209 | 0.71 | 0.701334 |
Target: 5'- gUCgCCGGCGAagGCUuuuacaAUUGCGCCGACg -3' miRNA: 3'- -AG-GGCUGCU--UGGua----UGACGCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 42777 | 0.71 | 0.691272 |
Target: 5'- aUCCUGcCGcaAGCCGUGCUaGCGCuCGACa -3' miRNA: 3'- -AGGGCuGC--UUGGUAUGA-CGCG-GCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 47185 | 0.71 | 0.67101 |
Target: 5'- gCCCaACGGAUUAUAgUGUucGCCGGCCg -3' miRNA: 3'- aGGGcUGCUUGGUAUgACG--CGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 37581 | 0.71 | 0.701334 |
Target: 5'- aUCUCGACGAACUGacucUAUUGCGaUCGACa -3' miRNA: 3'- -AGGGCUGCUUGGU----AUGACGC-GGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 45820 | 0.71 | 0.691272 |
Target: 5'- -aCCGGCGAuuucACCAgauUGCU-CGCCGACUc -3' miRNA: 3'- agGGCUGCU----UGGU---AUGAcGCGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 73632 | 0.72 | 0.6404 |
Target: 5'- --aCGAUGAG-CGUGCUcGCGCUGACCg -3' miRNA: 3'- aggGCUGCUUgGUAUGA-CGCGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 48207 | 0.72 | 0.619947 |
Target: 5'- aCCCGACGAcgauCUcgACUGCGauCCGGCa -3' miRNA: 3'- aGGGCUGCUu---GGuaUGACGC--GGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 36702 | 0.75 | 0.499926 |
Target: 5'- gCCCGGCGAAUCGUACUGCa-UGGCg -3' miRNA: 3'- aGGGCUGCUUGGUAUGACGcgGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 129846 | 0.76 | 0.443743 |
Target: 5'- uUCCCGGgGAAcCCAUACUGUuUCGACUg -3' miRNA: 3'- -AGGGCUgCUU-GGUAUGACGcGGCUGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 61848 | 0.78 | 0.35078 |
Target: 5'- aUCCCGACGGACaCAUuaauCUGuCGCUGGCg -3' miRNA: 3'- -AGGGCUGCUUG-GUAu---GAC-GCGGCUGg -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 36050 | 0.78 | 0.343045 |
Target: 5'- aUCCCGACGAcaaaacguCCAUG-UGCGCCG-CCg -3' miRNA: 3'- -AGGGCUGCUu-------GGUAUgACGCGGCuGG- -5' |
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8545 | 3' | -55.3 | NC_002169.1 | + | 22316 | 1.13 | 0.001856 |
Target: 5'- gUCCCGACGAACCAUACUGCGCCGACCg -3' miRNA: 3'- -AGGGCUGCUUGGUAUGACGCGGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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