miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8545 5' -63 NC_002169.1 + 99175 0.66 0.572005
Target:  5'- gUUGC-CGGCCAGUACGcgcgucuUGCCGaUCGa -3'
miRNA:   3'- -AACGaGCCGGUCGUGC-------ACGGCcGGCc -5'
8545 5' -63 NC_002169.1 + 26131 0.66 0.524599
Target:  5'- -aGCUCGGUUcguGCACG-GCC-GUCGGg -3'
miRNA:   3'- aaCGAGCCGGu--CGUGCaCGGcCGGCC- -5'
8545 5' -63 NC_002169.1 + 32264 0.68 0.450801
Target:  5'- -aGUUCGGCgaCAGCucgguacacgGCGUcGCCGGCCa- -3'
miRNA:   3'- aaCGAGCCG--GUCG----------UGCA-CGGCCGGcc -5'
8545 5' -63 NC_002169.1 + 84399 0.7 0.321737
Target:  5'- aUGCUCaaauuccGGCgCGGUGuCGUGCUGGCCGa -3'
miRNA:   3'- aACGAG-------CCG-GUCGU-GCACGGCCGGCc -5'
8545 5' -63 NC_002169.1 + 109988 0.74 0.175584
Target:  5'- gUGCagGGCgGGCAUGUGCuccacgCGGCCGGc -3'
miRNA:   3'- aACGagCCGgUCGUGCACG------GCCGGCC- -5'
8545 5' -63 NC_002169.1 + 84573 0.75 0.16312
Target:  5'- -cGUuuUCGGCCAGCACGacaCCGcGCCGGa -3'
miRNA:   3'- aaCG--AGCCGGUCGUGCac-GGC-CGGCC- -5'
8545 5' -63 NC_002169.1 + 22517 0.83 0.045186
Target:  5'- ----cCGGCCGGCACGUGCUGGCCGa -3'
miRNA:   3'- aacgaGCCGGUCGUGCACGGCCGGCc -5'
8545 5' -63 NC_002169.1 + 22356 1.08 0.00067
Target:  5'- aUUGCUCGGCCAGCACGUGCCGGCCGGa -3'
miRNA:   3'- -AACGAGCCGGUCGUGCACGGCCGGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.