Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8545 | 5' | -63 | NC_002169.1 | + | 99175 | 0.66 | 0.572005 |
Target: 5'- gUUGC-CGGCCAGUACGcgcgucuUGCCGaUCGa -3' miRNA: 3'- -AACGaGCCGGUCGUGC-------ACGGCcGGCc -5' |
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8545 | 5' | -63 | NC_002169.1 | + | 26131 | 0.66 | 0.524599 |
Target: 5'- -aGCUCGGUUcguGCACG-GCC-GUCGGg -3' miRNA: 3'- aaCGAGCCGGu--CGUGCaCGGcCGGCC- -5' |
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8545 | 5' | -63 | NC_002169.1 | + | 32264 | 0.68 | 0.450801 |
Target: 5'- -aGUUCGGCgaCAGCucgguacacgGCGUcGCCGGCCa- -3' miRNA: 3'- aaCGAGCCG--GUCG----------UGCA-CGGCCGGcc -5' |
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8545 | 5' | -63 | NC_002169.1 | + | 84399 | 0.7 | 0.321737 |
Target: 5'- aUGCUCaaauuccGGCgCGGUGuCGUGCUGGCCGa -3' miRNA: 3'- aACGAG-------CCG-GUCGU-GCACGGCCGGCc -5' |
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8545 | 5' | -63 | NC_002169.1 | + | 109988 | 0.74 | 0.175584 |
Target: 5'- gUGCagGGCgGGCAUGUGCuccacgCGGCCGGc -3' miRNA: 3'- aACGagCCGgUCGUGCACG------GCCGGCC- -5' |
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8545 | 5' | -63 | NC_002169.1 | + | 84573 | 0.75 | 0.16312 |
Target: 5'- -cGUuuUCGGCCAGCACGacaCCGcGCCGGa -3' miRNA: 3'- aaCG--AGCCGGUCGUGCac-GGC-CGGCC- -5' |
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8545 | 5' | -63 | NC_002169.1 | + | 22517 | 0.83 | 0.045186 |
Target: 5'- ----cCGGCCGGCACGUGCUGGCCGa -3' miRNA: 3'- aacgaGCCGGUCGUGCACGGCCGGCc -5' |
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8545 | 5' | -63 | NC_002169.1 | + | 22356 | 1.08 | 0.00067 |
Target: 5'- aUUGCUCGGCCAGCACGUGCCGGCCGGa -3' miRNA: 3'- -AACGAGCCGGUCGUGCACGGCCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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