miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8546 3' -60.3 NC_002169.1 + 107817 0.66 0.68584
Target:  5'- -uUCUcgGCucugauuaUAGgCGGCGUCGCCGAu -3'
miRNA:   3'- uuAGAuaCGc-------GUCgGCCGCGGCGGCU- -5'
8546 3' -60.3 NC_002169.1 + 81528 0.66 0.675763
Target:  5'- cAUCg--GCuCgAGCUGGCGCCGCUGu -3'
miRNA:   3'- uUAGauaCGcG-UCGGCCGCGGCGGCu -5'
8546 3' -60.3 NC_002169.1 + 1237 0.66 0.675763
Target:  5'- uAUCU-UGCaGCGGCgCGuCGCCGUCGAa -3'
miRNA:   3'- uUAGAuACG-CGUCG-GCcGCGGCGGCU- -5'
8546 3' -60.3 NC_002169.1 + 1725 0.66 0.66565
Target:  5'- cAAUCUuacGCGCcGCCGccacCGCCGCCa- -3'
miRNA:   3'- -UUAGAua-CGCGuCGGCc---GCGGCGGcu -5'
8546 3' -60.3 NC_002169.1 + 32265 0.66 0.625016
Target:  5'- --gUUcgGCGaCAGCucgguacaCGGCGUCGCCGGc -3'
miRNA:   3'- uuaGAuaCGC-GUCG--------GCCGCGGCGGCU- -5'
8546 3' -60.3 NC_002169.1 + 34505 0.67 0.614851
Target:  5'- -uUCU-UGCgGCGG-CGGCGCCGUCGc -3'
miRNA:   3'- uuAGAuACG-CGUCgGCCGCGGCGGCu -5'
8546 3' -60.3 NC_002169.1 + 47215 0.67 0.584462
Target:  5'- ------cGUGCAGCCGuugcucGUGUCGCCGAa -3'
miRNA:   3'- uuagauaCGCGUCGGC------CGCGGCGGCU- -5'
8546 3' -60.3 NC_002169.1 + 77930 0.67 0.574391
Target:  5'- -cUCguugGUGCuGCAccaucgcguGCCGcGCGUCGCCGAc -3'
miRNA:   3'- uuAGa---UACG-CGU---------CGGC-CGCGGCGGCU- -5'
8546 3' -60.3 NC_002169.1 + 6224 0.67 0.564361
Target:  5'- uAGUCgccGcCGCcGCCGcCGCCGCCGAg -3'
miRNA:   3'- -UUAGauaC-GCGuCGGCcGCGGCGGCU- -5'
8546 3' -60.3 NC_002169.1 + 125093 0.68 0.544447
Target:  5'- -cUCUGU-CGCcGCCGcCGCCGCCGc -3'
miRNA:   3'- uuAGAUAcGCGuCGGCcGCGGCGGCu -5'
8546 3' -60.3 NC_002169.1 + 22488 0.71 0.379982
Target:  5'- -cUCUAcgGCGCGGUCGGCGCaguaugguuCGUCGGg -3'
miRNA:   3'- uuAGAUa-CGCGUCGGCCGCG---------GCGGCU- -5'
8546 3' -60.3 NC_002169.1 + 42809 0.71 0.371847
Target:  5'- --gCUGUGCGUAGUcaaaggCGGCGCCGCg-- -3'
miRNA:   3'- uuaGAUACGCGUCG------GCCGCGGCGgcu -5'
8546 3' -60.3 NC_002169.1 + 25819 1.06 0.001438
Target:  5'- cAAUCUAUGCGCAGCCGGCGCCGCCGAc -3'
miRNA:   3'- -UUAGAUACGCGUCGGCCGCGGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.