miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8546 5' -52.8 NC_002169.1 + 16146 0.66 0.977997
Target:  5'- uUUUGGUGACAGuacugccaauguuguAUCGaGGUGUGGAg- -3'
miRNA:   3'- gAAGCCGCUGUU---------------UAGC-CCGUACCUgc -5'
8546 5' -52.8 NC_002169.1 + 43374 0.66 0.977025
Target:  5'- -aUCGGCGACAAAUCGcucuuCAUGuGAaCGu -3'
miRNA:   3'- gaAGCCGCUGUUUAGCcc---GUAC-CU-GC- -5'
8546 5' -52.8 NC_002169.1 + 74717 0.67 0.958455
Target:  5'- -cUCGacacGCGACAGGUgGGGCAcguaaUGGcGCGg -3'
miRNA:   3'- gaAGC----CGCUGUUUAgCCCGU-----ACC-UGC- -5'
8546 5' -52.8 NC_002169.1 + 43262 0.67 0.950459
Target:  5'- ---aGGUGACGuuGUCGGGCAUcacuucGACGg -3'
miRNA:   3'- gaagCCGCUGUu-UAGCCCGUAc-----CUGC- -5'
8546 5' -52.8 NC_002169.1 + 22776 0.67 0.950459
Target:  5'- -aUCGGCGACAGAcuUUGGGUcgucguAUGuGAUa -3'
miRNA:   3'- gaAGCCGCUGUUU--AGCCCG------UAC-CUGc -5'
8546 5' -52.8 NC_002169.1 + 80409 0.68 0.926196
Target:  5'- gUUCGGCGACGA--UGGGUuucGUGaGCGg -3'
miRNA:   3'- gAAGCCGCUGUUuaGCCCG---UACcUGC- -5'
8546 5' -52.8 NC_002169.1 + 22476 0.68 0.920596
Target:  5'- -gUCGGCG-CAGuaugguucGUCGGGacgccaaGUGGGCGc -3'
miRNA:   3'- gaAGCCGCuGUU--------UAGCCCg------UACCUGC- -5'
8546 5' -52.8 NC_002169.1 + 82614 0.68 0.920596
Target:  5'- -gUCGGCGuCAauagauacGAUCGGGCuagacUGGAaCGa -3'
miRNA:   3'- gaAGCCGCuGU--------UUAGCCCGu----ACCU-GC- -5'
8546 5' -52.8 NC_002169.1 + 120899 0.69 0.908647
Target:  5'- -gUCGGUGACGAGagcggugacUUGGGU--GGACGa -3'
miRNA:   3'- gaAGCCGCUGUUU---------AGCCCGuaCCUGC- -5'
8546 5' -52.8 NC_002169.1 + 46087 0.69 0.888883
Target:  5'- aUUCGGCGACAAAgaCGGuCAUGaGAUa -3'
miRNA:   3'- gAAGCCGCUGUUUa-GCCcGUAC-CUGc -5'
8546 5' -52.8 NC_002169.1 + 48935 0.69 0.881816
Target:  5'- --gCGGCGGCGua--GGGCAUGuGCGa -3'
miRNA:   3'- gaaGCCGCUGUuuagCCCGUACcUGC- -5'
8546 5' -52.8 NC_002169.1 + 22156 0.71 0.790168
Target:  5'- aCUUCGGCaGugAGcgCGGGCAacGACa -3'
miRNA:   3'- -GAAGCCG-CugUUuaGCCCGUacCUGc -5'
8546 5' -52.8 NC_002169.1 + 60777 0.72 0.761564
Target:  5'- --aUGGCGGCAAuguccgcgCGGGCGUGGGu- -3'
miRNA:   3'- gaaGCCGCUGUUua------GCCCGUACCUgc -5'
8546 5' -52.8 NC_002169.1 + 19705 0.76 0.525248
Target:  5'- aCUUCGGUGAaAGAUCaGGGCAUGuGCGg -3'
miRNA:   3'- -GAAGCCGCUgUUUAG-CCCGUACcUGC- -5'
8546 5' -52.8 NC_002169.1 + 57626 0.77 0.482706
Target:  5'- -gUCuGCGACGAGUCGGGCAcgaguagcaguugcUGGGCu -3'
miRNA:   3'- gaAGcCGCUGUUUAGCCCGU--------------ACCUGc -5'
8546 5' -52.8 NC_002169.1 + 25857 1.1 0.004821
Target:  5'- cCUUCGGCGACAAAUCGGGCAUGGACGa -3'
miRNA:   3'- -GAAGCCGCUGUUUAGCCCGUACCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.