Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8547 | 3' | -47 | NC_002169.1 | + | 123910 | 0.66 | 0.999366 |
|
Target: 5'- uGGUGuCUAgGGUGGUGGCCuGAGCGu -3' miRNA: 3'- uUUACuGGUaUUACUAUCGG-CUCGUc -5' |
|||||||
| 8547 | 3' | -47 | NC_002169.1 | + | 101512 | 0.67 | 0.998205 |
|
Target: 5'- cGGcgGGCaCAUAAUG-UGGCCGGGUg- -3' miRNA: 3'- -UUuaCUG-GUAUUACuAUCGGCUCGuc -5' |
|||||||
| 8547 | 3' | -47 | NC_002169.1 | + | 110294 | 0.68 | 0.996881 |
|
Target: 5'- --uUGACCGagugGAUGGCCGAGgAc -3' miRNA: 3'- uuuACUGGUauuaCUAUCGGCUCgUc -5' |
|||||||
| 8547 | 3' | -47 | NC_002169.1 | + | 45880 | 0.68 | 0.994836 |
|
Target: 5'- uGAUGAUgAUGAUGAUGGUgGugacGGCGGg -3' miRNA: 3'- uUUACUGgUAUUACUAUCGgC----UCGUC- -5' |
|||||||
| 8547 | 3' | -47 | NC_002169.1 | + | 90476 | 0.7 | 0.987548 |
|
Target: 5'- ---aGACUAUGGUGAU-GCCGGGUc- -3' miRNA: 3'- uuuaCUGGUAUUACUAuCGGCUCGuc -5' |
|||||||
| 8547 | 3' | -47 | NC_002169.1 | + | 79118 | 0.7 | 0.98386 |
|
Target: 5'- --uUGugCGUAAUaAUGGgCGAGCAGa -3' miRNA: 3'- uuuACugGUAUUAcUAUCgGCUCGUC- -5' |
|||||||
| 8547 | 3' | -47 | NC_002169.1 | + | 22516 | 0.7 | 0.981732 |
|
Target: 5'- ---cGGCCGgcacGUGcUGGCCGAGCAa -3' miRNA: 3'- uuuaCUGGUau--UACuAUCGGCUCGUc -5' |
|||||||
| 8547 | 3' | -47 | NC_002169.1 | + | 33594 | 1.07 | 0.020309 |
|
Target: 5'- gAAAUGACCAUAAUGAUAGCCGAGCAGu -3' miRNA: 3'- -UUUACUGGUAUUACUAUCGGCUCGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home