miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8548 3' -57.5 NC_002169.1 + 8778 0.66 0.835391
Target:  5'- -aUCGaCGUAuuggggacuaaacuCGUAGGCGUUGgggucgcuGGCGCGa -3'
miRNA:   3'- caAGC-GCGU--------------GCAUCCGCAGC--------UCGCGC- -5'
8548 3' -57.5 NC_002169.1 + 113441 0.66 0.829607
Target:  5'- cGUUCGCGUgcaACGUGauGUGg-GAGCGCGg -3'
miRNA:   3'- -CAAGCGCG---UGCAUc-CGCagCUCGCGC- -5'
8548 3' -57.5 NC_002169.1 + 26126 0.67 0.785935
Target:  5'- gGUUCGUGCACGgc--CGUCGGGCa-- -3'
miRNA:   3'- -CAAGCGCGUGCauccGCAGCUCGcgc -5'
8548 3' -57.5 NC_002169.1 + 85538 0.68 0.738866
Target:  5'- uGUUCGaGCGCucguauuuguuuGUGGGCaaaguGUCGAGUGCGc -3'
miRNA:   3'- -CAAGCgCGUG------------CAUCCG-----CAGCUCGCGC- -5'
8548 3' -57.5 NC_002169.1 + 112479 0.68 0.729141
Target:  5'- --aCGCGCAaaUGUgcaaGGGCGUCGAGauuGCa -3'
miRNA:   3'- caaGCGCGU--GCA----UCCGCAGCUCg--CGc -5'
8548 3' -57.5 NC_002169.1 + 32021 0.7 0.618659
Target:  5'- uGUUCGCGUuucaucGCGgucaauGGauaGUCGAGCGUGa -3'
miRNA:   3'- -CAAGCGCG------UGCau----CCg--CAGCUCGCGC- -5'
8548 3' -57.5 NC_002169.1 + 48677 0.7 0.588288
Target:  5'- -aUCGUGCACGacguCGUCGAGCGUa -3'
miRNA:   3'- caAGCGCGUGCauccGCAGCUCGCGc -5'
8548 3' -57.5 NC_002169.1 + 8312 0.7 0.588288
Target:  5'- --cUGUGCAUGUuGGCGUCGgguauguuaucGGCGCGc -3'
miRNA:   3'- caaGCGCGUGCAuCCGCAGC-----------UCGCGC- -5'
8548 3' -57.5 NC_002169.1 + 28744 0.72 0.528558
Target:  5'- -cUUGCGCA-GUAGGCGUuuUGuGCGCGc -3'
miRNA:   3'- caAGCGCGUgCAUCCGCA--GCuCGCGC- -5'
8548 3' -57.5 NC_002169.1 + 22279 0.72 0.48056
Target:  5'- -aUCG-GUugGUgcGGGCGcCGAGCGCGu -3'
miRNA:   3'- caAGCgCGugCA--UCCGCaGCUCGCGC- -5'
8548 3' -57.5 NC_002169.1 + 57769 0.73 0.447351
Target:  5'- -gUCGUGCACGUcGGCGUCgGAcauuucgaacgcgaaGCGCGc -3'
miRNA:   3'- caAGCGCGUGCAuCCGCAG-CU---------------CGCGC- -5'
8548 3' -57.5 NC_002169.1 + 19155 0.74 0.391637
Target:  5'- aUUCGUGCggcaugauaaACGaacuGGCGUCGAGCGCu -3'
miRNA:   3'- cAAGCGCG----------UGCau--CCGCAGCUCGCGc -5'
8548 3' -57.5 NC_002169.1 + 34839 1.09 0.001986
Target:  5'- uGUUCGCGCACGUAGGCGUCGAGCGCGg -3'
miRNA:   3'- -CAAGCGCGUGCAUCCGCAGCUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.