miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8548 5' -49.8 NC_002169.1 + 52405 0.66 0.996777
Target:  5'- gGUCGUGCaagCGACGccuCCCAAcgauagacgGUACGa -3'
miRNA:   3'- -CGGCAUGa--GCUGCu--GGGUUaa-------CAUGC- -5'
8548 5' -49.8 NC_002169.1 + 96486 0.66 0.996777
Target:  5'- aGUCGcuCUCGACGACCgAcUUGUAa- -3'
miRNA:   3'- -CGGCauGAGCUGCUGGgUuAACAUgc -5'
8548 5' -49.8 NC_002169.1 + 22549 0.66 0.996207
Target:  5'- gGCCGUACaUGGCGACgCCGA----GCGc -3'
miRNA:   3'- -CGGCAUGaGCUGCUG-GGUUaacaUGC- -5'
8548 5' -49.8 NC_002169.1 + 20856 0.67 0.993045
Target:  5'- uGCCGuUGCUCGucGCGGCCUGuuucaaacGUACGu -3'
miRNA:   3'- -CGGC-AUGAGC--UGCUGGGUuaa-----CAUGC- -5'
8548 5' -49.8 NC_002169.1 + 23335 0.67 0.991991
Target:  5'- uGCCGcUGgUaaaACGuCCCAAUUGUGCGu -3'
miRNA:   3'- -CGGC-AUgAgc-UGCuGGGUUAACAUGC- -5'
8548 5' -49.8 NC_002169.1 + 22377 0.68 0.990815
Target:  5'- gGCCGgaaagauugcGCUCGGCGuCgCCA--UGUACGg -3'
miRNA:   3'- -CGGCa---------UGAGCUGCuG-GGUuaACAUGC- -5'
8548 5' -49.8 NC_002169.1 + 28297 0.68 0.99069
Target:  5'- cGCCGUguccacgACUCGACcgauGCCCAGUUccGCa -3'
miRNA:   3'- -CGGCA-------UGAGCUGc---UGGGUUAAcaUGc -5'
8548 5' -49.8 NC_002169.1 + 128650 0.68 0.989507
Target:  5'- cGCaugGCUCGACGGCaCCGAaacGUACa -3'
miRNA:   3'- -CGgcaUGAGCUGCUG-GGUUaa-CAUGc -5'
8548 5' -49.8 NC_002169.1 + 24541 0.68 0.989507
Target:  5'- cCCGUGaUCGACGGCgCGAUcgccaacgUGUACa -3'
miRNA:   3'- cGGCAUgAGCUGCUGgGUUA--------ACAUGc -5'
8548 5' -49.8 NC_002169.1 + 2527 0.68 0.986459
Target:  5'- gGCCGUACUUGccguCGACCaauUUGUGa- -3'
miRNA:   3'- -CGGCAUGAGCu---GCUGGguuAACAUgc -5'
8548 5' -49.8 NC_002169.1 + 59320 0.69 0.978378
Target:  5'- uGCUGUugUCGAUGACUUuacgUGUAuCGa -3'
miRNA:   3'- -CGGCAugAGCUGCUGGGuua-ACAU-GC- -5'
8548 5' -49.8 NC_002169.1 + 69967 0.69 0.973203
Target:  5'- aUCG-ACUCGACGACCaCAucgGUGCc -3'
miRNA:   3'- cGGCaUGAGCUGCUGG-GUuaaCAUGc -5'
8548 5' -49.8 NC_002169.1 + 35001 0.7 0.967186
Target:  5'- cCCGcGCUCGACG-CCUAcgUGcGCGa -3'
miRNA:   3'- cGGCaUGAGCUGCuGGGUuaACaUGC- -5'
8548 5' -49.8 NC_002169.1 + 53642 0.7 0.963844
Target:  5'- aGUCGUugUCGAUGACaCCGGcgGcgGCGa -3'
miRNA:   3'- -CGGCAugAGCUGCUG-GGUUaaCa-UGC- -5'
8548 5' -49.8 NC_002169.1 + 25985 0.7 0.956462
Target:  5'- aGCCGg--UCGGCGGCgCCGgcugcgcauagAUUGUGCGg -3'
miRNA:   3'- -CGGCaugAGCUGCUG-GGU-----------UAACAUGC- -5'
8548 5' -49.8 NC_002169.1 + 78642 0.71 0.938772
Target:  5'- uGCUGUugUCGACGA---AAUUGUACa -3'
miRNA:   3'- -CGGCAugAGCUGCUgggUUAACAUGc -5'
8548 5' -49.8 NC_002169.1 + 84324 0.72 0.910956
Target:  5'- uGCCGaAUUC-AUGGCCCAAcUGUACGu -3'
miRNA:   3'- -CGGCaUGAGcUGCUGGGUUaACAUGC- -5'
8548 5' -49.8 NC_002169.1 + 26880 0.74 0.845331
Target:  5'- uGUCGUgcauACUCGACGACa-GAUUGUACu -3'
miRNA:   3'- -CGGCA----UGAGCUGCUGggUUAACAUGc -5'
8548 5' -49.8 NC_002169.1 + 34873 1.11 0.008772
Target:  5'- gGCCGUACUCGACGACCCAAUUGUACGu -3'
miRNA:   3'- -CGGCAUGAGCUGCUGGGUUAACAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.