miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8549 3' -55.9 NC_002169.1 + 102094 0.66 0.869715
Target:  5'- aCGCGgCCGGagAGcGCAAcGUCGCcACc -3'
miRNA:   3'- aGCGCgGGCCagUC-CGUU-UAGCGuUG- -5'
8549 3' -55.9 NC_002169.1 + 110787 0.66 0.862124
Target:  5'- uUCGcCGCUauuGUCGGGCAAGUUGUuGCc -3'
miRNA:   3'- -AGC-GCGGgc-CAGUCCGUUUAGCGuUG- -5'
8549 3' -55.9 NC_002169.1 + 106489 0.66 0.861353
Target:  5'- uUCGCGCCaCGGUUcauccguGGGCucccAAUCG-GACa -3'
miRNA:   3'- -AGCGCGG-GCCAG-------UCCGu---UUAGCgUUG- -5'
8549 3' -55.9 NC_002169.1 + 13867 0.67 0.846311
Target:  5'- gUUGCGCgCCGGcgUGGGCAuaauucaCGCGACc -3'
miRNA:   3'- -AGCGCG-GGCCa-GUCCGUuua----GCGUUG- -5'
8549 3' -55.9 NC_002169.1 + 24387 0.67 0.838102
Target:  5'- aUCGCGCCguCGaucaCGGGCGAGUCGUuuCu -3'
miRNA:   3'- -AGCGCGG--GCca--GUCCGUUUAGCGuuG- -5'
8549 3' -55.9 NC_002169.1 + 28836 0.69 0.736972
Target:  5'- aUCGUgGCCauaCGG-CAGGCAAGUgUGCGACg -3'
miRNA:   3'- -AGCG-CGG---GCCaGUCCGUUUA-GCGUUG- -5'
8549 3' -55.9 NC_002169.1 + 12889 0.69 0.717
Target:  5'- -gGCG-CUGGUCuGGUuuuGUCGCAGCg -3'
miRNA:   3'- agCGCgGGCCAGuCCGuu-UAGCGUUG- -5'
8549 3' -55.9 NC_002169.1 + 131820 0.7 0.67624
Target:  5'- gCGCGCCCcuUCAucGGCGAGUauauaCGCAACa -3'
miRNA:   3'- aGCGCGGGccAGU--CCGUUUA-----GCGUUG- -5'
8549 3' -55.9 NC_002169.1 + 36233 0.7 0.675211
Target:  5'- cCGUGCCCGGcucguuucccaucUCGGGCAAcggcAUCGaCGAa -3'
miRNA:   3'- aGCGCGGGCC-------------AGUCCGUU----UAGC-GUUg -5'
8549 3' -55.9 NC_002169.1 + 112491 0.7 0.655601
Target:  5'- aUCGCGCauuCGGUCAGGCAua-UGCugaaAACg -3'
miRNA:   3'- -AGCGCGg--GCCAGUCCGUuuaGCG----UUG- -5'
8549 3' -55.9 NC_002169.1 + 35738 1.11 0.001826
Target:  5'- aUCGCGCCCGGUCAGGCAAAUCGCAACg -3'
miRNA:   3'- -AGCGCGGGCCAGUCCGUUUAGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.