Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8550 | 3' | -52.7 | NC_002169.1 | + | 95530 | 0.66 | 0.971438 |
Target: 5'- cAUUCAGCg-GUAUUACGGccGCGACGu -3' miRNA: 3'- -UGAGUCGgaCAUGGUGCUaaCGCUGU- -5' |
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8550 | 3' | -52.7 | NC_002169.1 | + | 47153 | 0.66 | 0.968395 |
Target: 5'- cGCUCGGCggcgUUGggagcGCCGUGAUUGCGGCc -3' miRNA: 3'- -UGAGUCG----GACa----UGGUGCUAACGCUGu -5' |
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8550 | 3' | -52.7 | NC_002169.1 | + | 98439 | 0.67 | 0.945244 |
Target: 5'- gAUUCAGCCac-GCCGCGcgacgUGUGACAc -3' miRNA: 3'- -UGAGUCGGacaUGGUGCua---ACGCUGU- -5' |
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8550 | 3' | -52.7 | NC_002169.1 | + | 36569 | 0.68 | 0.924265 |
Target: 5'- aGCUCAcGCCgUGUucgacgcAUCAaGAUUGCGACAu -3' miRNA: 3'- -UGAGU-CGG-ACA-------UGGUgCUAACGCUGU- -5' |
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8550 | 3' | -52.7 | NC_002169.1 | + | 57157 | 0.69 | 0.871794 |
Target: 5'- cCUCAGCCggcggcGUccaaagcgGCCACGGcgGCGGCGa -3' miRNA: 3'- uGAGUCGGa-----CA--------UGGUGCUaaCGCUGU- -5' |
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8550 | 3' | -52.7 | NC_002169.1 | + | 60643 | 0.7 | 0.856129 |
Target: 5'- uCUCGGCgCUGUGCaACGAUUGCa--- -3' miRNA: 3'- uGAGUCG-GACAUGgUGCUAACGcugu -5' |
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8550 | 3' | -52.7 | NC_002169.1 | + | 122008 | 0.72 | 0.756143 |
Target: 5'- cGCUCGGCCguugGCgGCGAgcaacuuuuUUGCGGCAu -3' miRNA: 3'- -UGAGUCGGaca-UGgUGCU---------AACGCUGU- -5' |
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8550 | 3' | -52.7 | NC_002169.1 | + | 36842 | 1.08 | 0.005192 |
Target: 5'- aACUCAGCCUGUACCACGAUUGCGACAu -3' miRNA: 3'- -UGAGUCGGACAUGGUGCUAACGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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