miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8551 3' -42.1 NC_002169.1 + 42061 0.84 0.79504
Target:  5'- ---aGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagUAUGuGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 105032 0.84 0.79504
Target:  5'- -aUCAgccUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAGU---AUGuGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 52974 0.84 0.784665
Target:  5'- ---aGUACACcAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagUAUGUGcUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 53096 0.85 0.730392
Target:  5'- uUUUCAUACuCaAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAGUAUGuGcUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11639 0.85 0.719153
Target:  5'- aUUCuaGUACAUGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- aAAG--UAUGUGCUAgAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 105285 0.86 0.707817
Target:  5'- ---aGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAg -5'
8551 3' -42.1 NC_002169.1 + 105691 0.86 0.707817
Target:  5'- ---aAUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGuAG- -5'
8551 3' -42.1 NC_002169.1 + 11572 0.87 0.650158
Target:  5'- ---aGUACuCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaagUAUGuGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 10819 0.87 0.626877
Target:  5'- ---aGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAgAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 105206 0.88 0.615238
Target:  5'- ---aAUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 52666 0.88 0.580463
Target:  5'- ---aGUACACGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- aaagUAUGUGCUAgAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 41770 0.89 0.546117
Target:  5'- --cCAUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaGUAUGuGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11362 0.9 0.501411
Target:  5'- ---aAUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11128 0.92 0.407524
Target:  5'- ---aAUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 71832 0.92 0.407524
Target:  5'- aUUCuaGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAAG--UAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 52860 0.92 0.407524
Target:  5'- aUUCuaGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAAG--UAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 11228 0.93 0.378752
Target:  5'- ---aGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 10900 0.93 0.378752
Target:  5'- ---aGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 119514 0.93 0.378752
Target:  5'- ---aGUACACGAUCUUUGCUUUUAUCg -3'
miRNA:   3'- aaagUAUGUGCUAGAAACGAAAGUAG- -5'
8551 3' -42.1 NC_002169.1 + 104953 0.94 0.351375
Target:  5'- cUUCAgUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aAAGU-AUGUGCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.