Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8552 | 3' | -44.4 | NC_002169.1 | + | 41869 | 0.94 | 0.211936 |
Target: 5'- uUUCA-UACACGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 41996 | 1.09 | 0.031093 |
Target: 5'- gUUCAGUACACGAUCUUUGCUUUCAUCu -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 42065 | 0.92 | 0.284846 |
Target: 5'- aUUUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAGUCAUGuGCUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 42188 | 0.98 | 0.134849 |
Target: 5'- -gUAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 42192 | 0.99 | 0.113264 |
Target: 5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 42255 | 1.01 | 0.089485 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 42378 | 0.71 | 0.997608 |
Target: 5'- -----aACACaAUCUUUGCUUUCGUCc -3' miRNA: 3'- aagucaUGUGcUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 42453 | 0.73 | 0.986266 |
Target: 5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3' miRNA: 3'- aagUCA---UGUGcUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 52662 | 0.96 | 0.174368 |
Target: 5'- uUUUAGUACACGAUgUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUCAUGUGCUAgAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 52782 | 1.05 | 0.049101 |
Target: 5'- aUCGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 52860 | 0.95 | 0.200541 |
Target: 5'- aUUCuAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAG-UCAUGUGCUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 52898 | 0.86 | 0.496029 |
Target: 5'- uUUUAGUACAUcAUCUUUGCUUUCAUCc -3' miRNA: 3'- -AAGUCAUGUGcUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 52978 | 0.92 | 0.284846 |
Target: 5'- uUUUAGUACACcAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUCAUGUGcUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 53039 | 0.97 | 0.138796 |
Target: 5'- aUUCuAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAG-UCAUGUGCUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 53095 | 0.7 | 0.998376 |
Target: 5'- uUUCA-UACuCaAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUcAUGuGcUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 53120 | 1.05 | 0.050611 |
Target: 5'- aUUCAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 53238 | 0.89 | 0.367117 |
Target: 5'- uUUCAaUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 53318 | 1.03 | 0.066394 |
Target: 5'- aUUCAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 59828 | 0.67 | 0.999951 |
Target: 5'- gUUCAuGU-CGCGAUCgaugUUGCcguUUUCGUCg -3' miRNA: 3'- -AAGU-CAuGUGCUAGa---AACG---AAAGUAG- -5' |
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8552 | 3' | -44.4 | NC_002169.1 | + | 71634 | 1.1 | 0.026678 |
Target: 5'- uUUCAGUACACGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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