miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8552 5' -46.6 NC_002169.1 + 58439 0.67 0.999248
Target:  5'- uUGGGCGGAGcauacgugcGCAAucuuAUCGUGUACg- -3'
miRNA:   3'- -ACCUGCUUU---------CGUUuc--UAGCACAUGau -5'
8552 5' -46.6 NC_002169.1 + 64769 0.67 0.99952
Target:  5'- uUGGGCGAcuuGGGCAucGGUCGUuuGU-CUGa -3'
miRNA:   3'- -ACCUGCU---UUCGUuuCUAGCA--CAuGAU- -5'
8552 5' -46.6 NC_002169.1 + 71668 0.96 0.11059
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5'
8552 5' -46.6 NC_002169.1 + 71795 0.94 0.142642
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5'
8552 5' -46.6 NC_002169.1 + 84422 0.69 0.996468
Target:  5'- aGGAUGcGAGUucAGGAUCGaaUGUACUAc -3'
miRNA:   3'- aCCUGCuUUCGu-UUCUAGC--ACAUGAU- -5'
8552 5' -46.6 NC_002169.1 + 104797 0.8 0.689548
Target:  5'- uUGGACGAAAGCAAAGAUUG---ACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCacaUGAU- -5'
8552 5' -46.6 NC_002169.1 + 104867 0.89 0.286884
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCaCA--UGAU- -5'
8552 5' -46.6 NC_002169.1 + 104925 0.81 0.63411
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5'
8552 5' -46.6 NC_002169.1 + 104989 0.78 0.794696
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUGCg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGau -5'
8552 5' -46.6 NC_002169.1 + 104995 0.83 0.545781
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5'
8552 5' -46.6 NC_002169.1 + 105117 0.96 0.120445
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5'
8552 5' -46.6 NC_002169.1 + 105128 0.8 0.700511
Target:  5'- --uACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- accUGCUUUCGUUUCUAGcACAUGAU- -5'
8552 5' -46.6 NC_002169.1 + 105238 0.99 0.078267
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5'
8552 5' -46.6 NC_002169.1 + 105253 0.95 0.131111
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5'
8552 5' -46.6 NC_002169.1 + 105366 0.91 0.221042
Target:  5'- uUGGACaAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -ACCUGcUUUCGUUUCUAGCACAUGAU- -5'
8552 5' -46.6 NC_002169.1 + 105443 0.86 0.403428
Target:  5'- -cGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGau -5'
8552 5' -46.6 NC_002169.1 + 105483 0.87 0.358534
Target:  5'- uUGGACGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGCACAUGAu -5'
8552 5' -46.6 NC_002169.1 + 105534 0.89 0.265642
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5'
8552 5' -46.6 NC_002169.1 + 105571 1 0.06966
Target:  5'- uUGGAUGAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGAU- -5'
8552 5' -46.6 NC_002169.1 + 105662 1.07 0.023989
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUGu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.