miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8553 5' -43.5 NC_002169.1 + 105600 0.77 0.972014
Target:  5'- aUACAcaAUCUUUGCUUUCGUCGAa- -3'
miRNA:   3'- cAUGUacUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 53091 0.78 0.953418
Target:  5'- aUACucaAUCUUUGCUUUCAUCGAgGa -3'
miRNA:   3'- cAUGuacUAGAAACGAAAGUAGCUgC- -5'
8553 5' -43.5 NC_002169.1 + 10711 0.8 0.902249
Target:  5'- aGUACucGAUCUUUGCUUUCGuccaagaucuUCGACGa -3'
miRNA:   3'- -CAUGuaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 52902 0.8 0.902249
Target:  5'- aGUACAUcAUCUUUGCUUUCAuccaagauccUCGAUGa -3'
miRNA:   3'- -CAUGUAcUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 11038 0.8 0.902249
Target:  5'- aGUACucGAUCUUUGCUUUCGuccaagaucuUCGACGa -3'
miRNA:   3'- -CAUGuaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 42190 0.8 0.887709
Target:  5'- aGUACAcGAUCUUUGCUUUCGUCcaagauuauaGAUGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGUAG----------CUGC- -5'
8553 5' -43.5 NC_002169.1 + 52666 0.82 0.828519
Target:  5'- aGUACAcGAUgUUUGCUUUCAUCGAa- -3'
miRNA:   3'- -CAUGUaCUAgAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 52785 0.82 0.819116
Target:  5'- gGUACAcGAUCUUUGCUUUCGuccaagauccUCGAUGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 119422 0.82 0.799699
Target:  5'- aGUACAcGAUCUUUGCUUUCGuccaagaucuUCGAUGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 105502 0.82 0.799699
Target:  5'- aGUACAcGAUCUUUGCUUUCGuccaagaucuUCGAUGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 10819 0.83 0.75874
Target:  5'- aGUACAcGAUgUUUGCUUUCGUCGAgGa -3'
miRNA:   3'- -CAUGUaCUAgAAACGAAAGUAGCUgC- -5'
8553 5' -43.5 NC_002169.1 + 11761 0.84 0.737391
Target:  5'- aUACAcGAUCUUUGCUUUCGUCcACGa -3'
miRNA:   3'- cAUGUaCUAGAAACGAAAGUAGcUGC- -5'
8553 5' -43.5 NC_002169.1 + 105207 0.84 0.726542
Target:  5'- aUACAcGAUCUUUGCUUuuguccaagaUCGUCGACGa -3'
miRNA:   3'- cAUGUaCUAGAAACGAA----------AGUAGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 105412 0.85 0.704559
Target:  5'- aUACAcGAUCUUUGCUUUCAuccaagaucuUCGACGa -3'
miRNA:   3'- cAUGUaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 42000 0.85 0.671054
Target:  5'- aGUACAcGAUCUUUGCUUUCAUCuauaaucuugGACGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGUAG----------CUGC- -5'
8553 5' -43.5 NC_002169.1 + 52974 0.85 0.659793
Target:  5'- aGUACAccAUCUUUGCUUUCAUCGAgGa -3'
miRNA:   3'- -CAUGUacUAGAAACGAAAGUAGCUgC- -5'
8553 5' -43.5 NC_002169.1 + 119514 0.86 0.625891
Target:  5'- aGUACAcGAUCUUUGCUUUUAUCGAa- -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGUAGCUgc -5'
8553 5' -43.5 NC_002169.1 + 119792 0.86 0.625891
Target:  5'- gGUACAcGAUCUUUGCUUUCGuccaagaucuUCGACGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 10939 0.86 0.625891
Target:  5'- gGUACAcGAUCUUUGCUUUCGuccaagaucuUCGACGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGU----------AGCUGC- -5'
8553 5' -43.5 NC_002169.1 + 120041 0.87 0.603301
Target:  5'- aGUACAcGAUCUUUGCUUUCGuccaagaucuUCGACGa -3'
miRNA:   3'- -CAUGUaCUAGAAACGAAAGU----------AGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.