miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8554 3' -55.8 NC_002169.1 + 1332 0.73 0.555607
Target:  5'- aUGACGGCGGcGGCGGCggCGGcGGCGg -3'
miRNA:   3'- cACUGCCGCUcCUGUCGuaGCU-CUGC- -5'
8554 3' -55.8 NC_002169.1 + 1559 0.67 0.862354
Target:  5'- gGUGGCGGCGGuGGCGGCGgcgCGuaAGAUu -3'
miRNA:   3'- -CACUGCCGCUcCUGUCGUa--GC--UCUGc -5'
8554 3' -55.8 NC_002169.1 + 6370 0.72 0.575846
Target:  5'- -cGGCGGCGAcuACAGCGUCGAuGAUa -3'
miRNA:   3'- caCUGCCGCUccUGUCGUAGCU-CUGc -5'
8554 3' -55.8 NC_002169.1 + 9057 0.66 0.884265
Target:  5'- -gGACGGCGGuGGGCAcggGCAUCGGcuGAa- -3'
miRNA:   3'- caCUGCCGCU-CCUGU---CGUAGCU--CUgc -5'
8554 3' -55.8 NC_002169.1 + 12515 0.72 0.565703
Target:  5'- gGUGGCGGCGuuGACGGU--CGAGGCu -3'
miRNA:   3'- -CACUGCCGCucCUGUCGuaGCUCUGc -5'
8554 3' -55.8 NC_002169.1 + 19195 0.68 0.830242
Target:  5'- -cGACGGCGucGACGGCuAUCGcuaucGGGCc -3'
miRNA:   3'- caCUGCCGCucCUGUCG-UAGC-----UCUGc -5'
8554 3' -55.8 NC_002169.1 + 27144 0.66 0.897755
Target:  5'- uGUGAUGGCuGuAGGcgGGCGUCGggaAGACGg -3'
miRNA:   3'- -CACUGCCG-C-UCCugUCGUAGC---UCUGC- -5'
8554 3' -55.8 NC_002169.1 + 30483 0.69 0.748194
Target:  5'- -cGGCGGCaacguGAGcGGCGGCGUCGucGACa -3'
miRNA:   3'- caCUGCCG-----CUC-CUGUCGUAGCu-CUGc -5'
8554 3' -55.8 NC_002169.1 + 45899 1 0.011538
Target:  5'- gGUGACGGCG-GGACAGCAUCGAGACGa -3'
miRNA:   3'- -CACUGCCGCuCCUGUCGUAGCUCUGC- -5'
8554 3' -55.8 NC_002169.1 + 48292 0.7 0.728596
Target:  5'- -cGACGGCGccGACGGCGguuuguaUGAGACa -3'
miRNA:   3'- caCUGCCGCucCUGUCGUa------GCUCUGc -5'
8554 3' -55.8 NC_002169.1 + 57102 0.8 0.227371
Target:  5'- uUGACGGCGGuGGACAGU-UCGAGGCu -3'
miRNA:   3'- cACUGCCGCU-CCUGUCGuAGCUCUGc -5'
8554 3' -55.8 NC_002169.1 + 72586 0.69 0.766432
Target:  5'- -aGugGGCGAugaaacuGGACGGgAuUCGAGGCa -3'
miRNA:   3'- caCugCCGCU-------CCUGUCgU-AGCUCUGc -5'
8554 3' -55.8 NC_002169.1 + 74900 0.72 0.606488
Target:  5'- -cGAUGGCGAcGACGGCG--GAGACGa -3'
miRNA:   3'- caCUGCCGCUcCUGUCGUagCUCUGC- -5'
8554 3' -55.8 NC_002169.1 + 77843 0.68 0.813066
Target:  5'- -cGACGGCG-GGAuCGGCAcgcacguauUCGAGGuCGc -3'
miRNA:   3'- caCUGCCGCuCCU-GUCGU---------AGCUCU-GC- -5'
8554 3' -55.8 NC_002169.1 + 97088 0.69 0.745278
Target:  5'- uUGACGGCGAuGcggucgacgcugccGACGGUGUCGAcGACGc -3'
miRNA:   3'- cACUGCCGCU-C--------------CUGUCGUAGCU-CUGC- -5'
8554 3' -55.8 NC_002169.1 + 102735 0.69 0.757843
Target:  5'- -cGGCGGCGGcGGCGGCGaCGAGgACa -3'
miRNA:   3'- caCUGCCGCUcCUGUCGUaGCUC-UGc -5'
8554 3' -55.8 NC_002169.1 + 107872 0.67 0.838561
Target:  5'- -cGACGGCGGuGGugGugGUGggCGAGACGa -3'
miRNA:   3'- caCUGCCGCU-CCugU--CGUa-GCUCUGC- -5'
8554 3' -55.8 NC_002169.1 + 108724 0.76 0.387674
Target:  5'- uGUGGCGGCGGcGGCGGCGaCGAcGACGa -3'
miRNA:   3'- -CACUGCCGCUcCUGUCGUaGCU-CUGC- -5'
8554 3' -55.8 NC_002169.1 + 115969 0.67 0.862354
Target:  5'- -cGGCGGUGAGGG-AGUuuAUCGAggaGACGg -3'
miRNA:   3'- caCUGCCGCUCCUgUCG--UAGCU---CUGC- -5'
8554 3' -55.8 NC_002169.1 + 116970 0.68 0.830242
Target:  5'- uGUG-CGGgGAGGACGGCcUCGAa--- -3'
miRNA:   3'- -CACuGCCgCUCCUGUCGuAGCUcugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.