miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8554 5' -63.8 NC_002169.1 + 53476 0.66 0.531682
Target:  5'- aUCGUaacccgCGGCGCCGUCGCUgGCCAu-- -3'
miRNA:   3'- cAGCAg-----GCCGUGGCGGCGG-CGGUcua -5'
8554 5' -63.8 NC_002169.1 + 25827 0.66 0.503412
Target:  5'- -gCGcagCCGGCGCCGCCGaCCgGCUAa-- -3'
miRNA:   3'- caGCa--GGCCGUGGCGGC-GG-CGGUcua -5'
8554 5' -63.8 NC_002169.1 + 74741 0.66 0.494133
Target:  5'- cGUCGUCUc-CGCCGUCGUCGCCAu-- -3'
miRNA:   3'- -CAGCAGGccGUGGCGGCGGCGGUcua -5'
8554 5' -63.8 NC_002169.1 + 1845 0.67 0.466785
Target:  5'- aUCGcUCCuGGCGCCGUCGCCaCCGa-- -3'
miRNA:   3'- cAGC-AGG-CCGUGGCGGCGGcGGUcua -5'
8554 5' -63.8 NC_002169.1 + 15167 0.67 0.466785
Target:  5'- -cCG-CCGcCACCGCCGCCGUCGu-- -3'
miRNA:   3'- caGCaGGCcGUGGCGGCGGCGGUcua -5'
8554 5' -63.8 NC_002169.1 + 125564 0.67 0.465886
Target:  5'- cUCGUuuUCGGCGCCuucgcgcGUCGCCGCCAc-- -3'
miRNA:   3'- cAGCA--GGCCGUGG-------CGGCGGCGGUcua -5'
8554 5' -63.8 NC_002169.1 + 4278 0.67 0.457843
Target:  5'- uGUCG-CCGuCGCCGCCGUCGUCGu-- -3'
miRNA:   3'- -CAGCaGGCcGUGGCGGCGGCGGUcua -5'
8554 5' -63.8 NC_002169.1 + 26946 0.67 0.448993
Target:  5'- --gGUUCGGCGgUGuCCGCCGCCcGAa -3'
miRNA:   3'- cagCAGGCCGUgGC-GGCGGCGGuCUa -5'
8554 5' -63.8 NC_002169.1 + 81534 0.67 0.440239
Target:  5'- cUCGagCUGGCGCCGCUGuuGCUGGc- -3'
miRNA:   3'- cAGCa-GGCCGUGGCGGCggCGGUCua -5'
8554 5' -63.8 NC_002169.1 + 122159 0.67 0.440239
Target:  5'- cGUCGUCguugacGCuauuGCCGUCGCCGCCAcGAUg -3'
miRNA:   3'- -CAGCAGgc----CG----UGGCGGCGGCGGU-CUA- -5'
8554 5' -63.8 NC_002169.1 + 1683 0.68 0.426437
Target:  5'- cGUCGguggcgaCGGCGCCaGgagcgauaaucuuugCCGCCGCCGGAc -3'
miRNA:   3'- -CAGCag-----GCCGUGG-C---------------GGCGGCGGUCUa -5'
8554 5' -63.8 NC_002169.1 + 1491 0.7 0.287852
Target:  5'- -cCG-CCGcCGCCGCCGCCGCCGu-- -3'
miRNA:   3'- caGCaGGCcGUGGCGGCGGCGGUcua -5'
8554 5' -63.8 NC_002169.1 + 128107 0.71 0.28143
Target:  5'- -aCG-CCGcCGCCGCCGCCGCCGc-- -3'
miRNA:   3'- caGCaGGCcGUGGCGGCGGCGGUcua -5'
8554 5' -63.8 NC_002169.1 + 39379 0.71 0.262845
Target:  5'- -cCGaUCGGCACCGCCGUCGUCAu-- -3'
miRNA:   3'- caGCaGGCCGUGGCGGCGGCGGUcua -5'
8554 5' -63.8 NC_002169.1 + 108885 0.75 0.140934
Target:  5'- cGUCGUCguCGcCGCCGCCGCCGCCAc-- -3'
miRNA:   3'- -CAGCAG--GCcGUGGCGGCGGCGGUcua -5'
8554 5' -63.8 NC_002169.1 + 125090 0.75 0.137476
Target:  5'- uGUCG-CCGcCGCCGCCGCCGCCGc-- -3'
miRNA:   3'- -CAGCaGGCcGUGGCGGCGGCGGUcua -5'
8554 5' -63.8 NC_002169.1 + 62991 0.75 0.134095
Target:  5'- aUCGUCCGGCgGCCGUCGUCGCagUAGAa -3'
miRNA:   3'- cAGCAGGCCG-UGGCGGCGGCG--GUCUa -5'
8554 5' -63.8 NC_002169.1 + 6225 0.76 0.127563
Target:  5'- aGUCG-CCGcCGCCGCCGCCGCCGccGAg -3'
miRNA:   3'- -CAGCaGGCcGUGGCGGCGGCGGU--CUa -5'
8554 5' -63.8 NC_002169.1 + 34667 0.78 0.089506
Target:  5'- aUCGgcgaCGGCGCCGCCGCCGCaAGAa -3'
miRNA:   3'- cAGCag--GCCGUGGCGGCGGCGgUCUa -5'
8554 5' -63.8 NC_002169.1 + 102897 0.79 0.078735
Target:  5'- cGUUGUCCucgucGcCGCCGCCGCCGCCGGGUu -3'
miRNA:   3'- -CAGCAGGc----C-GUGGCGGCGGCGGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.