miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8555 3' -52 NC_002169.1 + 60928 0.66 0.986859
Target:  5'- uCUGCCGaUCAUGA-AGCAAUGccaGCGc -3'
miRNA:   3'- -GGCGGC-AGUACUcUCGUUACua-CGCc -5'
8555 3' -52 NC_002169.1 + 912 0.66 0.985159
Target:  5'- gCCGCCGUCAgcguGGUAAUGGaauCGGg -3'
miRNA:   3'- -GGCGGCAGUacucUCGUUACUac-GCC- -5'
8555 3' -52 NC_002169.1 + 18252 0.66 0.979048
Target:  5'- gCCGCCGUCcucGAgGGGCuuugcGUGAacguccguuaUGCGGu -3'
miRNA:   3'- -GGCGGCAGua-CU-CUCGu----UACU----------ACGCC- -5'
8555 3' -52 NC_002169.1 + 22301 0.66 0.979048
Target:  5'- aCUGCCGaaGUcAGGGCGuaauaucgguUGGUGCGGg -3'
miRNA:   3'- -GGCGGCagUAcUCUCGUu---------ACUACGCC- -5'
8555 3' -52 NC_002169.1 + 19573 0.66 0.979048
Target:  5'- uUCGUCGaUAUGGGAuGCGAUG--GCGGg -3'
miRNA:   3'- -GGCGGCaGUACUCU-CGUUACuaCGCC- -5'
8555 3' -52 NC_002169.1 + 96555 0.66 0.978816
Target:  5'- gUGUCGUUGUGuaagaagGGGGUGAUGGUGCGc -3'
miRNA:   3'- gGCGGCAGUAC-------UCUCGUUACUACGCc -5'
8555 3' -52 NC_002169.1 + 106129 0.67 0.976645
Target:  5'- uUGCgGUac-GGGAGCGAUGAUGaugaGGa -3'
miRNA:   3'- gGCGgCAguaCUCUCGUUACUACg---CC- -5'
8555 3' -52 NC_002169.1 + 47152 0.67 0.974047
Target:  5'- aCGCuCGgcggCGuUGGGAGCGccGUGAUuGCGGc -3'
miRNA:   3'- gGCG-GCa---GU-ACUCUCGU--UACUA-CGCC- -5'
8555 3' -52 NC_002169.1 + 111537 0.67 0.973776
Target:  5'- gUCGCgGUCGauccggcUGAGuGCcuUGAUGCGa -3'
miRNA:   3'- -GGCGgCAGU-------ACUCuCGuuACUACGCc -5'
8555 3' -52 NC_002169.1 + 124915 0.67 0.965
Target:  5'- -aGUCGUCcucgGUGGGGGCGGcgGcgGCGGc -3'
miRNA:   3'- ggCGGCAG----UACUCUCGUUa-CuaCGCC- -5'
8555 3' -52 NC_002169.1 + 41311 0.67 0.963645
Target:  5'- gCGCUGUCGgugaacacgcaggGGGAGuCGAUGucguuUGCGGu -3'
miRNA:   3'- gGCGGCAGUa------------CUCUC-GUUACu----ACGCC- -5'
8555 3' -52 NC_002169.1 + 60785 0.69 0.925304
Target:  5'- gCGCCGagAUGGcGGCAAUGuccgcGCGGg -3'
miRNA:   3'- gGCGGCagUACUcUCGUUACua---CGCC- -5'
8555 3' -52 NC_002169.1 + 56006 0.7 0.90762
Target:  5'- aCGCCGUCAgGAuAGUccAUGAUGCGa -3'
miRNA:   3'- gGCGGCAGUaCUcUCGu-UACUACGCc -5'
8555 3' -52 NC_002169.1 + 108710 0.7 0.887721
Target:  5'- gCGCCGUCGUGGaauguGGCGGcgGcgGCGGc -3'
miRNA:   3'- gGCGGCAGUACUc----UCGUUa-CuaCGCC- -5'
8555 3' -52 NC_002169.1 + 55984 0.7 0.88061
Target:  5'- aUGCCGUgCGUGucGGCAAUGAcGCGa -3'
miRNA:   3'- gGCGGCA-GUACucUCGUUACUaCGCc -5'
8555 3' -52 NC_002169.1 + 98767 0.7 0.88061
Target:  5'- aCCGUCGUCGUcGAGGuaggaacuGCGAguGUGCGGu -3'
miRNA:   3'- -GGCGGCAGUA-CUCU--------CGUUacUACGCC- -5'
8555 3' -52 NC_002169.1 + 15613 0.73 0.7791
Target:  5'- uCCgGCCGUCAUGuGGGCAAacGUGCa- -3'
miRNA:   3'- -GG-CGGCAGUACuCUCGUUacUACGcc -5'
8555 3' -52 NC_002169.1 + 48149 0.74 0.70977
Target:  5'- gCGCCGUCGUGuGcGaCAAUGGauuuUGCGGa -3'
miRNA:   3'- gGCGGCAGUACuCuC-GUUACU----ACGCC- -5'
8555 3' -52 NC_002169.1 + 120894 0.83 0.300452
Target:  5'- aCGCCGUCGgugacGAGAGCGGUGAcuuggguggacgaguUGCGGu -3'
miRNA:   3'- gGCGGCAGUa----CUCUCGUUACU---------------ACGCC- -5'
8555 3' -52 NC_002169.1 + 46181 1.13 0.003699
Target:  5'- uCCGCCGUCAUGAGAGCAAUGAUGCGGa -3'
miRNA:   3'- -GGCGGCAGUACUCUCGUUACUACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.