Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8556 | 5' | -56.8 | NC_002169.1 | + | 121248 | 0.66 | 0.870226 |
Target: 5'- -cGACCGCCggagcuuuaggcuuGAGuauCCCAAuGUCGgcCGCu -3' miRNA: 3'- uaCUGGCGG--------------CUCu--GGGUU-CAGCa-GCG- -5' |
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8556 | 5' | -56.8 | NC_002169.1 | + | 95560 | 0.66 | 0.86502 |
Target: 5'- cUGACCGCUaaugucgauGAGACC--GG-CGUCGUg -3' miRNA: 3'- uACUGGCGG---------CUCUGGguUCaGCAGCG- -5' |
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8556 | 5' | -56.8 | NC_002169.1 | + | 22463 | 0.66 | 0.849589 |
Target: 5'- -gGuuCGUCGGGACgCCAAGUgGgCGCa -3' miRNA: 3'- uaCugGCGGCUCUG-GGUUCAgCaGCG- -5' |
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8556 | 5' | -56.8 | NC_002169.1 | + | 24888 | 0.69 | 0.71314 |
Target: 5'- --uGCUGuuGAGACUCGucGUCGUCGUc -3' miRNA: 3'- uacUGGCggCUCUGGGUu-CAGCAGCG- -5' |
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8556 | 5' | -56.8 | NC_002169.1 | + | 94584 | 0.7 | 0.63208 |
Target: 5'- -aGGCUGgCGAGAgCCAcGUUGUCGUu -3' miRNA: 3'- uaCUGGCgGCUCUgGGUuCAGCAGCG- -5' |
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8556 | 5' | -56.8 | NC_002169.1 | + | 81849 | 0.72 | 0.53109 |
Target: 5'- uUGaACUGCCGAGuCCCGAGUCua-GCa -3' miRNA: 3'- uAC-UGGCGGCUCuGGGUUCAGcagCG- -5' |
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8556 | 5' | -56.8 | NC_002169.1 | + | 46992 | 1.1 | 0.001822 |
Target: 5'- gAUGACCGCCGAGACCCAAGUCGUCGCg -3' miRNA: 3'- -UACUGGCGGCUCUGGGUUCAGCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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