Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8557 | 3' | -41.9 | NC_002169.1 | + | 41873 | 0.8 | 0.937562 |
Target: 5'- ----aUACACGAUcUUUGCUUUCAUCg -3' miRNA: 3'- aaaucAUGUGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 105287 | 0.81 | 0.906237 |
Target: 5'- -cUAGUACAUGAUcUUUGCUUUCGUa -3' miRNA: 3'- aaAUCAUGUGCUAcAAACGAAAGUAg -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 42065 | 0.82 | 0.875701 |
Target: 5'- aUUUAGUACuCGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUCAUGuGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 52978 | 0.82 | 0.875701 |
Target: 5'- uUUUAGUACACcAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AAAUCAUGUGcUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 11570 | 0.82 | 0.867344 |
Target: 5'- -cUAGUACuCGAUcUUUGCUUUCAUCg -3' miRNA: 3'- aaAUCAUGuGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 104956 | 0.83 | 0.831262 |
Target: 5'- --cAGUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 53315 | 0.83 | 0.831262 |
Target: 5'- --cAGUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 53123 | 0.85 | 0.737548 |
Target: 5'- --cAGUACAUGAUcUUUGCUUUCGUCg -3' miRNA: 3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 105514 | 0.85 | 0.737548 |
Target: 5'- --cGGUACAUcAUGUUUGCUUUCAUCc -3' miRNA: 3'- aaaUCAUGUGcUACAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 71829 | 0.86 | 0.703681 |
Target: 5'- -cUAGUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 52857 | 0.86 | 0.703681 |
Target: 5'- -cUAGUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 52784 | 0.88 | 0.634182 |
Target: 5'- --cGGUACACGAUcUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 105501 | 0.88 | 0.634182 |
Target: 5'- --cAGUACACGAUcUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 105322 | 0.88 | 0.622519 |
Target: 5'- --aAGUACACaAUGUUUGCUUUCGUCc -3' miRNA: 3'- aaaUCAUGUGcUACAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 11230 | 0.88 | 0.599235 |
Target: 5'- -cUAGUACAUGAUcUUUGCUUUCGUCg -3' miRNA: 3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 53042 | 0.89 | 0.553123 |
Target: 5'- -cUAGUACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 41999 | 0.89 | 0.541748 |
Target: 5'- --cAGUACACGAUcUUUGCUUUCAUCu -3' miRNA: 3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 42188 | 0.89 | 0.541748 |
Target: 5'- -gUAGUACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- aaAUCAUGUGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 119602 | 0.9 | 0.530451 |
Target: 5'- --cAGUACACGAUcUUUGCUUUCGUCg -3' miRNA: 3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5' |
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8557 | 3' | -41.9 | NC_002169.1 | + | 71637 | 0.91 | 0.48621 |
Target: 5'- --cAGUACACGAUcUUUGCUUUCAUCg -3' miRNA: 3'- aaaUCAUGUGCUAcAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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