miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8557 5' -45.2 NC_002169.1 + 11443 0.83 0.637201
Target:  5'- -cGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 105443 0.83 0.625891
Target:  5'- -cGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGau -5'
8557 5' -45.2 NC_002169.1 + 11730 0.84 0.580814
Target:  5'- -cGAUGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUaCAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 105483 0.84 0.569634
Target:  5'- uUGGACGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGUACAUGAu -5'
8557 5' -45.2 NC_002169.1 + 10976 0.84 0.558507
Target:  5'- -cGACGAAAGCAAAcAUCGUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 42029 0.85 0.5147
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGau -5'
8557 5' -45.2 NC_002169.1 + 42220 0.85 0.503961
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAugau -5'
8557 5' -45.2 NC_002169.1 + 119484 0.86 0.482782
Target:  5'- uUGGACGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUAcAUGau -5'
8557 5' -45.2 NC_002169.1 + 52817 0.86 0.45185
Target:  5'- -cGAUGAAAGCAAAGAUgGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAgUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 10870 0.87 0.41236
Target:  5'- uUGGACG-AAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGUaCAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 42289 0.88 0.393431
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACA---UGAu -5'
8557 5' -45.2 NC_002169.1 + 105534 0.88 0.375075
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 104867 0.89 0.357307
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCA--UGAU- -5'
8557 5' -45.2 NC_002169.1 + 41930 0.89 0.348648
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCAUGau -5'
8557 5' -45.2 NC_002169.1 + 104989 0.9 0.315522
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUGCg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGau -5'
8557 5' -45.2 NC_002169.1 + 105366 0.9 0.315522
Target:  5'- uUGGACaAAAGCAAAGAUCGUGUAUUAa -3'
miRNA:   3'- -ACCUGcUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 105128 0.92 0.249839
Target:  5'- --uACGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- accUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 120073 0.92 0.236869
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 42158 0.93 0.212621
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5'
8557 5' -45.2 NC_002169.1 + 104925 0.93 0.212621
Target:  5'- -cGACGAAAGCAAAGAUCAUGUAUUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.