miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8558 5' -52 NC_002169.1 + 123570 0.66 0.985859
Target:  5'- cGACCGCGUAUCGuGGCaGGucGCgGUAc -3'
miRNA:   3'- aCUGGUGCGUAGC-UUG-CCu-UGgCAUc -5'
8558 5' -52 NC_002169.1 + 53505 0.66 0.985859
Target:  5'- uUGAUCACGaaAUCG-ACGGGGgUGUGGa -3'
miRNA:   3'- -ACUGGUGCg-UAGCuUGCCUUgGCAUC- -5'
8558 5' -52 NC_002169.1 + 133972 0.66 0.979938
Target:  5'- aGACCAa-CGUCGAaaccgGCGG-GCCGUAc -3'
miRNA:   3'- aCUGGUgcGUAGCU-----UGCCuUGGCAUc -5'
8558 5' -52 NC_002169.1 + 134369 0.66 0.977603
Target:  5'- uUGAgCGCGCAaaauUCGGGCGGcAGCgGUc- -3'
miRNA:   3'- -ACUgGUGCGU----AGCUUGCC-UUGgCAuc -5'
8558 5' -52 NC_002169.1 + 52194 0.67 0.969403
Target:  5'- aGACCaACGCcuccAUCGGAUGGcggUCGUAGa -3'
miRNA:   3'- aCUGG-UGCG----UAGCUUGCCuu-GGCAUC- -5'
8558 5' -52 NC_002169.1 + 86831 0.67 0.962866
Target:  5'- cGAUgGCGUcuuUUGAACaGGGACCGUGu -3'
miRNA:   3'- aCUGgUGCGu--AGCUUG-CCUUGGCAUc -5'
8558 5' -52 NC_002169.1 + 26938 0.68 0.951333
Target:  5'- cUGACCACGguUCG-GCGGuguCCGc-- -3'
miRNA:   3'- -ACUGGUGCguAGCuUGCCuu-GGCauc -5'
8558 5' -52 NC_002169.1 + 2291 0.69 0.937619
Target:  5'- uUGACCAcuccCGUAUCGA-UGGAAUUGUAc -3'
miRNA:   3'- -ACUGGU----GCGUAGCUuGCCUUGGCAUc -5'
8558 5' -52 NC_002169.1 + 25969 0.69 0.93255
Target:  5'- cGGCUGCGCAUaGAuuguGCGGAACgaCGUGGc -3'
miRNA:   3'- aCUGGUGCGUAgCU----UGCCUUG--GCAUC- -5'
8558 5' -52 NC_002169.1 + 22410 0.72 0.800591
Target:  5'- cGGCCGCGgAUgGAGCGGcgUCGUGa -3'
miRNA:   3'- aCUGGUGCgUAgCUUGCCuuGGCAUc -5'
8558 5' -52 NC_002169.1 + 56560 0.72 0.800591
Target:  5'- gGACCACGCAUUuGGCGuuGCCGUu- -3'
miRNA:   3'- aCUGGUGCGUAGcUUGCcuUGGCAuc -5'
8558 5' -52 NC_002169.1 + 43489 0.78 0.495594
Target:  5'- gGugUACGUGUCGAugGGGGgCGUGGg -3'
miRNA:   3'- aCugGUGCGUAGCUugCCUUgGCAUC- -5'
8558 5' -52 NC_002169.1 + 59601 1.09 0.007264
Target:  5'- gUGACCACGCAUCGAACGGAACCGUAGc -3'
miRNA:   3'- -ACUGGUGCGUAGCUUGCCUUGGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.