Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8559 | 3' | -58.3 | NC_002169.1 | + | 60611 | 1.08 | 0.00174 |
Target: 5'- uAAACCCACGCCCGCGCCGGACAUUGCc -3' miRNA: 3'- -UUUGGGUGCGGGCGCGGCCUGUAACG- -5' |
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8559 | 3' | -58.3 | NC_002169.1 | + | 58667 | 0.67 | 0.734651 |
Target: 5'- -cGCUCGCGUacaCGUGCaGGACAUUGa -3' miRNA: 3'- uuUGGGUGCGg--GCGCGgCCUGUAACg -5' |
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8559 | 3' | -58.3 | NC_002169.1 | + | 57772 | 0.67 | 0.744379 |
Target: 5'- --gUgCACGUCgGCGUCGGACAUUucgaacGCg -3' miRNA: 3'- uuuGgGUGCGGgCGCGGCCUGUAA------CG- -5' |
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8559 | 3' | -58.3 | NC_002169.1 | + | 56601 | 0.66 | 0.791368 |
Target: 5'- cGAUCUcguaaACGCggGCGCCGG-CGUUGCa -3' miRNA: 3'- uUUGGG-----UGCGggCGCGGCCuGUAACG- -5' |
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8559 | 3' | -58.3 | NC_002169.1 | + | 46953 | 0.66 | 0.800373 |
Target: 5'- cGAugCgAcCGCCCGaguuGCCGGugGUcuUGCu -3' miRNA: 3'- -UUugGgU-GCGGGCg---CGGCCugUA--ACG- -5' |
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8559 | 3' | -58.3 | NC_002169.1 | + | 36909 | 0.72 | 0.411829 |
Target: 5'- --uCCaCACGCCCGUGuuGGG-AUUGCa -3' miRNA: 3'- uuuGG-GUGCGGGCGCggCCUgUAACG- -5' |
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8559 | 3' | -58.3 | NC_002169.1 | + | 22643 | 0.7 | 0.552866 |
Target: 5'- ---aCUACGCCCGCuucccaaguGCCGGGCAcgggGCc -3' miRNA: 3'- uuugGGUGCGGGCG---------CGGCCUGUaa--CG- -5' |
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8559 | 3' | -58.3 | NC_002169.1 | + | 53472 | 0.69 | 0.572951 |
Target: 5'- uAACCCGCgGCgCCGuCGCUGGcCAUUcGCg -3' miRNA: 3'- uUUGGGUG-CG-GGC-GCGGCCuGUAA-CG- -5' |
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8559 | 3' | -58.3 | NC_002169.1 | + | 95504 | 0.68 | 0.654398 |
Target: 5'- uGACUaACGUCCGCGCgUGGACGacGCg -3' miRNA: 3'- uUUGGgUGCGGGCGCG-GCCUGUaaCG- -5' |
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8559 | 3' | -58.3 | NC_002169.1 | + | 35281 | 0.67 | 0.734651 |
Target: 5'- cGGCgUCGCGUUCGCaauaCUGGGCAUUGCg -3' miRNA: 3'- uUUG-GGUGCGGGCGc---GGCCUGUAACG- -5' |
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8559 | 3' | -58.3 | NC_002169.1 | + | 84567 | 0.67 | 0.734651 |
Target: 5'- cGGCCagCACGacaCCGCGCCGGAauuugaGCa -3' miRNA: 3'- uUUGG--GUGCg--GGCGCGGCCUguaa--CG- -5' |
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8559 | 3' | -58.3 | NC_002169.1 | + | 66457 | 0.66 | 0.772003 |
Target: 5'- -cGCCgGCGCgaaCGCacuuguugguguaGCCGGACAcgUUGCu -3' miRNA: 3'- uuUGGgUGCGg--GCG-------------CGGCCUGU--AACG- -5' |
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8559 | 3' | -58.3 | NC_002169.1 | + | 56761 | 0.66 | 0.772939 |
Target: 5'- -cGCCgGCGCCCGCGUuuacgagauCGG-CGUcgaugUGCu -3' miRNA: 3'- uuUGGgUGCGGGCGCG---------GCCuGUA-----ACG- -5' |
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8559 | 3' | -58.3 | NC_002169.1 | + | 14020 | 0.73 | 0.403218 |
Target: 5'- -uGCCCACGCCgGCGCgcaacacgaCGGGCGcaaUGCc -3' miRNA: 3'- uuUGGGUGCGGgCGCG---------GCCUGUa--ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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