Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8559 | 5' | -47.6 | NC_002169.1 | + | 47215 | 0.67 | 0.998283 |
Target: 5'- cGUGCAGCcGUUGCucgugucGCCGaauucguGCACGUg -3' miRNA: 3'- -CACGUUGcUAACG-------UGGCauu----UGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 42525 | 0.68 | 0.997563 |
Target: 5'- -aGCGacgGCGAUagcauacaaUGCACCaucAACACGCa -3' miRNA: 3'- caCGU---UGCUA---------ACGUGGcauUUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 50302 | 0.68 | 0.996371 |
Target: 5'- -gGCAACGGUUuacuauacauguccGCAUCGUAcACcCGCu -3' miRNA: 3'- caCGUUGCUAA--------------CGUGGCAUuUGuGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 111680 | 0.69 | 0.994399 |
Target: 5'- -cGCuGGCGAUg--GCCGUGAACGCGg -3' miRNA: 3'- caCG-UUGCUAacgUGGCAUUUGUGCg -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 116006 | 0.69 | 0.994399 |
Target: 5'- -aGCGACG-UUGCugUcGUAcgaacGACGCGCa -3' miRNA: 3'- caCGUUGCuAACGugG-CAU-----UUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 7958 | 0.69 | 0.992442 |
Target: 5'- -aGCAAUccacGCACCGUGGACAUagGCa -3' miRNA: 3'- caCGUUGcuaaCGUGGCAUUUGUG--CG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 77982 | 0.69 | 0.991278 |
Target: 5'- cGUGCGACGGUaaaaCGCCGg--GCAUGUa -3' miRNA: 3'- -CACGUUGCUAac--GUGGCauuUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 78094 | 0.69 | 0.991278 |
Target: 5'- -aGCAuCGAUcGCACC--AAAUACGCg -3' miRNA: 3'- caCGUuGCUAaCGUGGcaUUUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 111959 | 0.69 | 0.991278 |
Target: 5'- -gGUGACcacuUUGCugaaaucuGCCGUGAACACGCc -3' miRNA: 3'- caCGUUGcu--AACG--------UGGCAUUUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 18115 | 0.69 | 0.989976 |
Target: 5'- aUGCccCGAUUGcCGCUGUGcAugACGCg -3' miRNA: 3'- cACGuuGCUAAC-GUGGCAU-UugUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 52065 | 0.69 | 0.989976 |
Target: 5'- cGUGCGAUucg-GUGCCGggcuuGACGCGCa -3' miRNA: 3'- -CACGUUGcuaaCGUGGCau---UUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 29478 | 0.7 | 0.986921 |
Target: 5'- aGUGCGACGAUaugauaaugUGUGUCGUAAACGCcCg -3' miRNA: 3'- -CACGUUGCUA---------ACGUGGCAUUUGUGcG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 100680 | 0.7 | 0.986921 |
Target: 5'- uUGCGGCGAc-GCGCCGUuAGUACGUu -3' miRNA: 3'- cACGUUGCUaaCGUGGCAuUUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 125466 | 0.7 | 0.985146 |
Target: 5'- --aCGGCGGcUGCAgCGUAAACugGUg -3' miRNA: 3'- cacGUUGCUaACGUgGCAUUUGugCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 35332 | 0.7 | 0.983194 |
Target: 5'- -gGCGGCGGUgGCACUuaguuGUAuuGCGCGCu -3' miRNA: 3'- caCGUUGCUAaCGUGG-----CAUu-UGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 74710 | 0.71 | 0.981055 |
Target: 5'- -cGCGACaGGUgggGCA-CGUAAugGCGCg -3' miRNA: 3'- caCGUUG-CUAa--CGUgGCAUUugUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 36717 | 0.71 | 0.978717 |
Target: 5'- cUGCAugGcGUUGgAUCGcGAACGCGCc -3' miRNA: 3'- cACGUugC-UAACgUGGCaUUUGUGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 39261 | 0.71 | 0.973413 |
Target: 5'- -gGCGuCGGUgagUGCACCGUcGACgACGCc -3' miRNA: 3'- caCGUuGCUA---ACGUGGCAuUUG-UGCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 123376 | 0.72 | 0.967211 |
Target: 5'- uUGCAAUGGcgGCgACgGUAAACAgGCa -3' miRNA: 3'- cACGUUGCUaaCG-UGgCAUUUGUgCG- -5' |
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8559 | 5' | -47.6 | NC_002169.1 | + | 80405 | 0.73 | 0.939674 |
Target: 5'- -gGCGACGAUggguuucgugagcgGCAUCGUGAGCauugauGCGCu -3' miRNA: 3'- caCGUUGCUAa-------------CGUGGCAUUUG------UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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