miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8560 3' -56.3 NC_002169.1 + 100522 0.66 0.878342
Target:  5'- cGUAcuaaCGGCGCGUCGCCGcaacuUCUCa -3'
miRNA:   3'- uCGUuacgGUCGCGCAGUGGC-----AGAGc -5'
8560 3' -56.3 NC_002169.1 + 25096 0.66 0.878342
Target:  5'- cAGCGcgGCggcgagAGUGUGUCAgaUCGUCUCGu -3'
miRNA:   3'- -UCGUuaCGg-----UCGCGCAGU--GGCAGAGC- -5'
8560 3' -56.3 NC_002169.1 + 55498 0.66 0.863532
Target:  5'- cGCGAUGCC-GC-CGcCGCUGUCgUCGu -3'
miRNA:   3'- uCGUUACGGuCGcGCaGUGGCAG-AGC- -5'
8560 3' -56.3 NC_002169.1 + 14335 0.66 0.863532
Target:  5'- aAGacAUGCCGGCGaauauGUCGCCGUUgucgUCGa -3'
miRNA:   3'- -UCguUACGGUCGCg----CAGUGGCAG----AGC- -5'
8560 3' -56.3 NC_002169.1 + 4437 0.66 0.862769
Target:  5'- cGuCAGUGUCAGUGUcggugucgguaucGUCAUCGUcCUCGa -3'
miRNA:   3'- uC-GUUACGGUCGCG-------------CAGUGGCA-GAGC- -5'
8560 3' -56.3 NC_002169.1 + 129817 0.66 0.855806
Target:  5'- uGGCGAcaaUGUC-GCGCGUCGCgcuuCGaUCUCGa -3'
miRNA:   3'- -UCGUU---ACGGuCGCGCAGUG----GC-AGAGC- -5'
8560 3' -56.3 NC_002169.1 + 25693 0.66 0.847875
Target:  5'- cGGCGAaccGCCGG-GCGUCGCCGcCaacgCGg -3'
miRNA:   3'- -UCGUUa--CGGUCgCGCAGUGGCaGa---GC- -5'
8560 3' -56.3 NC_002169.1 + 105834 0.68 0.796375
Target:  5'- cGCAAUGgCCcguuugGGCgaaaGCGUCACCGUUUUa -3'
miRNA:   3'- uCGUUAC-GG------UCG----CGCAGUGGCAGAGc -5'
8560 3' -56.3 NC_002169.1 + 28225 0.68 0.776974
Target:  5'- uGGC-AUGCCgaccaucggcacgAGCGCGUCgAUCGcCUCGu -3'
miRNA:   3'- -UCGuUACGG-------------UCGCGCAG-UGGCaGAGC- -5'
8560 3' -56.3 NC_002169.1 + 77911 0.69 0.70961
Target:  5'- cGC-GUGCC-GCGCGUCGCCGaCgacgCGu -3'
miRNA:   3'- uCGuUACGGuCGCGCAGUGGCaGa---GC- -5'
8560 3' -56.3 NC_002169.1 + 125610 0.69 0.70961
Target:  5'- uAGC-AUGCCGGCuggGCGUacaauauuGCCGUUUCGg -3'
miRNA:   3'- -UCGuUACGGUCG---CGCAg-------UGGCAGAGC- -5'
8560 3' -56.3 NC_002169.1 + 111264 0.69 0.70961
Target:  5'- cGGCGGUGCgAGUGcCGUCGuuGUCa-- -3'
miRNA:   3'- -UCGUUACGgUCGC-GCAGUggCAGagc -5'
8560 3' -56.3 NC_002169.1 + 125572 0.69 0.689352
Target:  5'- cGGC---GCCuucGCGCGUCGCCGccaCUCGg -3'
miRNA:   3'- -UCGuuaCGGu--CGCGCAGUGGCa--GAGC- -5'
8560 3' -56.3 NC_002169.1 + 112777 0.71 0.607094
Target:  5'- cGCAAUGUCGGCGuCGUCGuaGUCgguUCGa -3'
miRNA:   3'- uCGUUACGGUCGC-GCAGUggCAG---AGC- -5'
8560 3' -56.3 NC_002169.1 + 18345 0.73 0.467881
Target:  5'- uGGauguUGCCAGCGCG-CACCGUCg-- -3'
miRNA:   3'- -UCguu-ACGGUCGCGCaGUGGCAGagc -5'
8560 3' -56.3 NC_002169.1 + 1240 0.74 0.422104
Target:  5'- aAGUAucuUGCagCGGCGCGUCGCCGUCg-- -3'
miRNA:   3'- -UCGUu--ACG--GUCGCGCAGUGGCAGagc -5'
8560 3' -56.3 NC_002169.1 + 46085 0.78 0.262383
Target:  5'- cGGCGGUGCCGGaCGaCGcagaUCAUCGUCUCGa -3'
miRNA:   3'- -UCGUUACGGUC-GC-GC----AGUGGCAGAGC- -5'
8560 3' -56.3 NC_002169.1 + 60941 1.08 0.002735
Target:  5'- aAGCAAUGCCAGCGCGUCACCGUCUCGc -3'
miRNA:   3'- -UCGUUACGGUCGCGCAGUGGCAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.