miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8561 3' -44.4 NC_002169.1 + 11442 0.99 0.113264
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 119796 0.99 0.116622
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 10935 0.99 0.116623
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 42188 0.98 0.134849
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 53039 0.97 0.138796
Target:  5'- aUUCuAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAG-UCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11230 0.97 0.155665
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 52662 0.96 0.174368
Target:  5'- uUUUAGUACACGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUCAUGUGCUAgAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 52860 0.95 0.200541
Target:  5'- aUUCuAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAG-UCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 71832 0.95 0.200541
Target:  5'- aUUCuAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAG-UCAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 41869 0.94 0.211936
Target:  5'- uUUCA-UACACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11167 0.92 0.277471
Target:  5'- -gCAGaaaUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUC---AUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 52978 0.92 0.284846
Target:  5'- uUUUAGUACACcAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAGUCAUGUGcUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 42065 0.92 0.284846
Target:  5'- aUUUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUCAUGuGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 104764 0.91 0.292375
Target:  5'- uUUCAaUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 10817 0.91 0.292375
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaGUCAUGUGCUAgAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 11570 0.91 0.307898
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaGUCAUGuGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 105287 0.9 0.349424
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaGUCAUGUGCUAGAAACGAAAGUAg -5'
8561 3' -44.4 NC_002169.1 + 53238 0.89 0.367117
Target:  5'- uUUCAaUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 105407 0.89 0.376191
Target:  5'- cUUUAaUACACGAUCUUUGCUUUCAUCc -3'
miRNA:   3'- -AAGUcAUGUGCUAGAAACGAAAGUAG- -5'
8561 3' -44.4 NC_002169.1 + 120230 0.88 0.404307
Target:  5'- ----aUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aagucAUGUGCUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.