miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8562 5' -56 NC_002169.1 + 134439 0.66 0.897797
Target:  5'- -gUCGcCGUgaaUGGCCAGAGCGaCGCGCa -3'
miRNA:   3'- agAGC-GCA---GUCGGUCUUGUcGUGCGc -5'
8562 5' -56 NC_002169.1 + 23628 0.66 0.897797
Target:  5'- aUCUCGCGUCcaaaGGCU---ACAGCuuAUGCGu -3'
miRNA:   3'- -AGAGCGCAG----UCGGucuUGUCG--UGCGC- -5'
8562 5' -56 NC_002169.1 + 73801 0.66 0.88425
Target:  5'- --gCGCGUCggaucGGUCAGcGCgAGCACGCu -3'
miRNA:   3'- agaGCGCAG-----UCGGUCuUG-UCGUGCGc -5'
8562 5' -56 NC_002169.1 + 53306 0.66 0.86224
Target:  5'- --cCGCGaauGGCCAGcGACGGCGcCGCGg -3'
miRNA:   3'- agaGCGCag-UCGGUC-UUGUCGU-GCGC- -5'
8562 5' -56 NC_002169.1 + 22392 0.67 0.854473
Target:  5'- gCUCgGCGUC-GCCAuGuACGGC-CGCGg -3'
miRNA:   3'- aGAG-CGCAGuCGGU-CuUGUCGuGCGC- -5'
8562 5' -56 NC_002169.1 + 81701 0.67 0.838332
Target:  5'- uUCUCGCGcCAGCa---ACAGCgGCGCc -3'
miRNA:   3'- -AGAGCGCaGUCGgucuUGUCG-UGCGc -5'
8562 5' -56 NC_002169.1 + 130382 0.68 0.785591
Target:  5'- aUCUaGCaGUCAGCCGGGcgGCAGUuCGCc -3'
miRNA:   3'- -AGAgCG-CAGUCGGUCU--UGUCGuGCGc -5'
8562 5' -56 NC_002169.1 + 47227 0.68 0.785591
Target:  5'- gCUCGUGUC-GCC-GAAUucguGCACGUGa -3'
miRNA:   3'- aGAGCGCAGuCGGuCUUGu---CGUGCGC- -5'
8562 5' -56 NC_002169.1 + 35760 0.69 0.717837
Target:  5'- gUCUCGCGguuaCAGUUuc-GCGGCACGCu -3'
miRNA:   3'- -AGAGCGCa---GUCGGucuUGUCGUGCGc -5'
8562 5' -56 NC_002169.1 + 77746 0.7 0.707784
Target:  5'- uUCgacgCGuCGUCGGCgAcGcGCGGCACGCGa -3'
miRNA:   3'- -AGa---GC-GCAGUCGgU-CuUGUCGUGCGC- -5'
8562 5' -56 NC_002169.1 + 73673 1.1 0.002227
Target:  5'- uUCUCGCGUCAGCCAGAACAGCACGCGa -3'
miRNA:   3'- -AGAGCGCAGUCGGUCUUGUCGUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.