miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8563 3' -44.6 NC_002169.1 + 42112 0.66 0.999998
Target:  5'- gCGAuaaucguUGUCGUCGCCaUUUCUAUUu -3'
miRNA:   3'- -GCUuuu----AUAGCAGUGGcAGAGAUAGc -5'
8563 3' -44.6 NC_002169.1 + 129269 0.66 0.999998
Target:  5'- uCGAAGAauuuUUGUCGCCGUCUUc---- -3'
miRNA:   3'- -GCUUUUau--AGCAGUGGCAGAGauagc -5'
8563 3' -44.6 NC_002169.1 + 128840 0.67 0.999995
Target:  5'- -aAAGAUAacUCGUCGCCGUugacguucCUCUcGUCGu -3'
miRNA:   3'- gcUUUUAU--AGCAGUGGCA--------GAGA-UAGC- -5'
8563 3' -44.6 NC_002169.1 + 135384 0.67 0.999993
Target:  5'- aCGAAGAauuggguuUGUCGcCGCCGUCgucgccgUUGUCa -3'
miRNA:   3'- -GCUUUU--------AUAGCaGUGGCAGa------GAUAGc -5'
8563 3' -44.6 NC_002169.1 + 109405 0.67 0.999987
Target:  5'- -----uUAUCGUCACUGUCgacGUCGu -3'
miRNA:   3'- gcuuuuAUAGCAGUGGCAGagaUAGC- -5'
8563 3' -44.6 NC_002169.1 + 3545 0.67 0.999982
Target:  5'- gGAuAAUucGUCGUCGuuGUCguccCUGUCGu -3'
miRNA:   3'- gCUuUUA--UAGCAGUggCAGa---GAUAGC- -5'
8563 3' -44.6 NC_002169.1 + 41274 0.68 0.999975
Target:  5'- aCGGGAAcucguacaacuuUGUCGUUGCCGUCgacGUCGu -3'
miRNA:   3'- -GCUUUU------------AUAGCAGUGGCAGagaUAGC- -5'
8563 3' -44.6 NC_002169.1 + 60938 0.68 0.999966
Target:  5'- aUGAAgcAAUGccagcgCGUCACCGUCUCgcugCGc -3'
miRNA:   3'- -GCUU--UUAUa-----GCAGUGGCAGAGaua-GC- -5'
8563 3' -44.6 NC_002169.1 + 78896 0.68 0.999953
Target:  5'- ------cGUCGUCGUCGUCUCgGUCGu -3'
miRNA:   3'- gcuuuuaUAGCAGUGGCAGAGaUAGC- -5'
8563 3' -44.6 NC_002169.1 + 51325 0.68 0.999937
Target:  5'- uCGAGGAgcggAUUGaguuugggCGCCGcCUCUAUCGa -3'
miRNA:   3'- -GCUUUUa---UAGCa-------GUGGCaGAGAUAGC- -5'
8563 3' -44.6 NC_002169.1 + 127610 0.69 0.99989
Target:  5'- aCGAuGAUAUCGgCGCCGUUgUCgaagAUCGa -3'
miRNA:   3'- -GCUuUUAUAGCaGUGGCAG-AGa---UAGC- -5'
8563 3' -44.6 NC_002169.1 + 63248 0.69 0.999856
Target:  5'- aCGAAAcUGccUCGUCGCCGgcacgcaUCUGUCu -3'
miRNA:   3'- -GCUUUuAU--AGCAGUGGCag-----AGAUAGc -5'
8563 3' -44.6 NC_002169.1 + 56812 0.69 0.999856
Target:  5'- aCGAccguauUGUCGUCGCCGUCguuacgUGUCa -3'
miRNA:   3'- -GCUuuu---AUAGCAGUGGCAGag----AUAGc -5'
8563 3' -44.6 NC_002169.1 + 120975 0.69 0.999813
Target:  5'- ------cGUCGUCGCCGUCgucgUUGUUGu -3'
miRNA:   3'- gcuuuuaUAGCAGUGGCAGa---GAUAGC- -5'
8563 3' -44.6 NC_002169.1 + 65457 0.69 0.999813
Target:  5'- uGuuAAUAUCGcCGCCGUCgUCgucGUCGu -3'
miRNA:   3'- gCuuUUAUAGCaGUGGCAG-AGa--UAGC- -5'
8563 3' -44.6 NC_002169.1 + 74043 0.7 0.999685
Target:  5'- gCGAAAuUGUCGUCACCGcaaacagUCUCa---- -3'
miRNA:   3'- -GCUUUuAUAGCAGUGGC-------AGAGauagc -5'
8563 3' -44.6 NC_002169.1 + 116095 0.7 0.999685
Target:  5'- uCGAAuAUGUCGcgGCCGUCUCgcuugccgcgcggUAUCGa -3'
miRNA:   3'- -GCUUuUAUAGCagUGGCAGAG-------------AUAGC- -5'
8563 3' -44.6 NC_002169.1 + 59873 0.7 0.99961
Target:  5'- uGAAAAUGUCGUU-CCGaCUCUG-CGa -3'
miRNA:   3'- gCUUUUAUAGCAGuGGCaGAGAUaGC- -5'
8563 3' -44.6 NC_002169.1 + 100023 0.71 0.999053
Target:  5'- uCGucAAUGUCGUCAUCGUCgg-AUUGa -3'
miRNA:   3'- -GCuuUUAUAGCAGUGGCAGagaUAGC- -5'
8563 3' -44.6 NC_002169.1 + 4455 0.73 0.99426
Target:  5'- uGucGGUAUCGUCAUCGUcCUCgaUAUCGa -3'
miRNA:   3'- gCuuUUAUAGCAGUGGCA-GAG--AUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.