miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8563 5' -47.4 NC_002169.1 + 127074 0.66 0.999734
Target:  5'- aGCGGUAGcguucGAUGGUGACGAc----- -3'
miRNA:   3'- cUGCUAUCu----CUGCCACUGCUauuaca -5'
8563 5' -47.4 NC_002169.1 + 4184 0.66 0.99951
Target:  5'- uGCGGUGGuGACGGcGGCGGaggcgaaggacuuggUGAUGg -3'
miRNA:   3'- cUGCUAUCuCUGCCaCUGCU---------------AUUACa -5'
8563 5' -47.4 NC_002169.1 + 71885 0.67 0.999173
Target:  5'- cGACGAcAGuGACGaugGAUGAUGAUGc -3'
miRNA:   3'- -CUGCUaUCuCUGCca-CUGCUAUUACa -5'
8563 5' -47.4 NC_002169.1 + 1449 0.67 0.999173
Target:  5'- -gUGGUGGAGGaggaGGUGGUGGUGGUGg -3'
miRNA:   3'- cuGCUAUCUCUg---CCACUGCUAUUACa -5'
8563 5' -47.4 NC_002169.1 + 118536 0.68 0.998169
Target:  5'- cGCGGaGGuAGAUGGUGGUGGUGAUGa -3'
miRNA:   3'- cUGCUaUC-UCUGCCACUGCUAUUACa -5'
8563 5' -47.4 NC_002169.1 + 40282 0.68 0.997799
Target:  5'- -uCGAUAGAauguuGGCGGUGcagGCGAUAuUGUa -3'
miRNA:   3'- cuGCUAUCU-----CUGCCAC---UGCUAUuACA- -5'
8563 5' -47.4 NC_002169.1 + 30901 0.68 0.997367
Target:  5'- cGCGA-AGAGGCcGUGACGAcGGUGa -3'
miRNA:   3'- cUGCUaUCUCUGcCACUGCUaUUACa -5'
8563 5' -47.4 NC_002169.1 + 107864 0.7 0.989404
Target:  5'- cGGCGAgacGAcGGCGGUGGUGGUGGUGg -3'
miRNA:   3'- -CUGCUau-CU-CUGCCACUGCUAUUACa -5'
8563 5' -47.4 NC_002169.1 + 1339 0.7 0.986229
Target:  5'- cGGCGGcGGcGGCGGcGGCGGUGGUGg -3'
miRNA:   3'- -CUGCUaUCuCUGCCaCUGCUAUUACa -5'
8563 5' -47.4 NC_002169.1 + 109247 0.71 0.977752
Target:  5'- cGACGAcGucGACaGUGACGAUAAUGa -3'
miRNA:   3'- -CUGCUaUcuCUGcCACUGCUAUUACa -5'
8563 5' -47.4 NC_002169.1 + 1555 0.73 0.954569
Target:  5'- uGGCGGUGGcGGCGGUGGCGGc----- -3'
miRNA:   3'- -CUGCUAUCuCUGCCACUGCUauuaca -5'
8563 5' -47.4 NC_002169.1 + 4114 0.77 0.799939
Target:  5'- uGACGAUAucGACGGUGGUGGUGGUGg -3'
miRNA:   3'- -CUGCUAUcuCUGCCACUGCUAUUACa -5'
8563 5' -47.4 NC_002169.1 + 75854 0.78 0.770545
Target:  5'- -uCGAUGGuGACGGcgaUGACGAUGAUGa -3'
miRNA:   3'- cuGCUAUCuCUGCC---ACUGCUAUUACa -5'
8563 5' -47.4 NC_002169.1 + 75592 0.87 0.320998
Target:  5'- -uCGAUAGAGACGGUGACGAUAu--- -3'
miRNA:   3'- cuGCUAUCUCUGCCACUGCUAUuaca -5'
8563 5' -47.4 NC_002169.1 + 75470 1.08 0.021517
Target:  5'- aGACGAUAGAGACGGUGACGAUAAUGUc -3'
miRNA:   3'- -CUGCUAUCUCUGCCACUGCUAUUACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.