Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8564 | 5' | -55.9 | NC_002169.1 | + | 79848 | 1.08 | 0.002412 |
Target: 5'- cAAAUCGCGCAGGCGGUCAGCACCAACa -3' miRNA: 3'- -UUUAGCGCGUCCGCCAGUCGUGGUUG- -5' |
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8564 | 5' | -55.9 | NC_002169.1 | + | 112447 | 0.75 | 0.36454 |
Target: 5'- gAGAUCGCcucuCAGGCGG-CAGuCGCCGGCg -3' miRNA: 3'- -UUUAGCGc---GUCCGCCaGUC-GUGGUUG- -5' |
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8564 | 5' | -55.9 | NC_002169.1 | + | 120580 | 0.72 | 0.491729 |
Target: 5'- --uUUGCaaGGGCGucGUCAGCGCCAACa -3' miRNA: 3'- uuuAGCGcgUCCGC--CAGUCGUGGUUG- -5' |
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8564 | 5' | -55.9 | NC_002169.1 | + | 116446 | 0.72 | 0.531764 |
Target: 5'- ----aGCGgAGGCGG-CAGCAgCAGCa -3' miRNA: 3'- uuuagCGCgUCCGCCaGUCGUgGUUG- -5' |
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8564 | 5' | -55.9 | NC_002169.1 | + | 77764 | 0.71 | 0.561509 |
Target: 5'- ---aCGCGC-GGCacgcgauGGUgCAGCACCAACg -3' miRNA: 3'- uuuaGCGCGuCCG-------CCA-GUCGUGGUUG- -5' |
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8564 | 5' | -55.9 | NC_002169.1 | + | 73801 | 0.69 | 0.677785 |
Target: 5'- ---gCGCGUcGGauCGGUCAGCGCgAGCa -3' miRNA: 3'- uuuaGCGCGuCC--GCCAGUCGUGgUUG- -5' |
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8564 | 5' | -55.9 | NC_002169.1 | + | 46108 | 0.68 | 0.739358 |
Target: 5'- cGGUCGCGCucucgaucuGGCGGcggCGGUGCCGGa -3' miRNA: 3'- uUUAGCGCGu--------CCGCCa--GUCGUGGUUg -5' |
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8564 | 5' | -55.9 | NC_002169.1 | + | 1552 | 0.67 | 0.788042 |
Target: 5'- uGGUgGCGguGGCGG-CGGUGgCGGCg -3' miRNA: 3'- uUUAgCGCguCCGCCaGUCGUgGUUG- -5' |
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8564 | 5' | -55.9 | NC_002169.1 | + | 99416 | 0.67 | 0.815552 |
Target: 5'- --uUUGCGC-GGCGGUCGcGUcggACCGAUa -3' miRNA: 3'- uuuAGCGCGuCCGCCAGU-CG---UGGUUG- -5' |
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8564 | 5' | -55.9 | NC_002169.1 | + | 127929 | 0.66 | 0.833027 |
Target: 5'- gGGAUCGUggugauGCgAGGCGG-CGGCGgCGGCg -3' miRNA: 3'- -UUUAGCG------CG-UCCGCCaGUCGUgGUUG- -5' |
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8564 | 5' | -55.9 | NC_002169.1 | + | 21658 | 0.66 | 0.84973 |
Target: 5'- ---aUGCGgAGGCGa-CGGCAUCAACg -3' miRNA: 3'- uuuaGCGCgUCCGCcaGUCGUGGUUG- -5' |
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8564 | 5' | -55.9 | NC_002169.1 | + | 58815 | 0.66 | 0.84973 |
Target: 5'- gAGcgCGCGCAGGCuGUC-GCGCaGAUa -3' miRNA: 3'- -UUuaGCGCGUCCGcCAGuCGUGgUUG- -5' |
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8564 | 5' | -55.9 | NC_002169.1 | + | 61112 | 0.66 | 0.857772 |
Target: 5'- -uGUCGCGCAGcgagaCGGUgAcGCGCUGGCa -3' miRNA: 3'- uuUAGCGCGUCc----GCCAgU-CGUGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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