Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 22625 | 0.66 | 0.997837 |
Target: 5'- gUGcCGGGCACGGggccaucgGCGAcgccgaggaacgGAUUAUCg -3' miRNA: 3'- gACuGCCCGUGCUa-------CGUUa-----------CUAAUAG- -5' |
|||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 44746 | 0.66 | 0.998545 |
Target: 5'- -aGuuCGGGCACGGUGCGuugcauaugcucuAUGAUg--- -3' miRNA: 3'- gaCu-GCCCGUGCUACGU-------------UACUAauag -5' |
|||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 111729 | 0.66 | 0.998573 |
Target: 5'- -cGACGGGaAUGGUGCAAUuGUacgAUCg -3' miRNA: 3'- gaCUGCCCgUGCUACGUUAcUAa--UAG- -5' |
|||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 110591 | 0.67 | 0.996466 |
Target: 5'- -cGAUGGGC-CGAgaguuUGCAGUGcAUUcgCg -3' miRNA: 3'- gaCUGCCCGuGCU-----ACGUUAC-UAAuaG- -5' |
|||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 69778 | 0.68 | 0.993336 |
Target: 5'- gUGAUGGGaUACGAUGCGucucUGAg-GUCg -3' miRNA: 3'- gACUGCCC-GUGCUACGUu---ACUaaUAG- -5' |
|||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 58598 | 0.68 | 0.991095 |
Target: 5'- -cGACGGGUcCGAUGUAGacgcgcgauUGAUUAa- -3' miRNA: 3'- gaCUGCCCGuGCUACGUU---------ACUAAUag -5' |
|||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 43836 | 0.68 | 0.99228 |
Target: 5'- uUGAUGGGuCACGuacuUGacGUGGUUGUCg -3' miRNA: 3'- gACUGCCC-GUGCu---ACguUACUAAUAG- -5' |
|||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 61782 | 0.71 | 0.951183 |
Target: 5'- uUGACGGuGC-CGAgacGCAGUGAUcGUCc -3' miRNA: 3'- gACUGCC-CGuGCUa--CGUUACUAaUAG- -5' |
|||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 27257 | 0.73 | 0.913815 |
Target: 5'- --cAUGGGCAUGGUGCGcAUGAUUAg- -3' miRNA: 3'- gacUGCCCGUGCUACGU-UACUAAUag -5' |
|||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 2275 | 0.74 | 0.879005 |
Target: 5'- -cGAUGGaauuGUACGAUGCGGUGuGUUAUCg -3' miRNA: 3'- gaCUGCC----CGUGCUACGUUAC-UAAUAG- -5' |
|||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 98068 | 0.74 | 0.879005 |
Target: 5'- uUGACGGGCAcuCGGUGUccauuGAaGAUUGUCu -3' miRNA: 3'- gACUGCCCGU--GCUACG-----UUaCUAAUAG- -5' |
|||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 35887 | 0.77 | 0.7616 |
Target: 5'- cCUGAcCGGGCGCGAUGCGAUc------ -3' miRNA: 3'- -GACU-GCCCGUGCUACGUUAcuaauag -5' |
|||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 51661 | 0.79 | 0.644116 |
Target: 5'- aUGACGGGCACGAUGgAGuaucUGAU-GUCu -3' miRNA: 3'- gACUGCCCGUGCUACgUU----ACUAaUAG- -5' |
|||||||
8565 | 5' | -48.3 | NC_002169.1 | + | 84069 | 1.12 | 0.009014 |
Target: 5'- gCUGACGGGCACGAUGCAAUGAUUAUCg -3' miRNA: 3'- -GACUGCCCGUGCUACGUUACUAAUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home