miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8566 5' -48.5 NC_002169.1 + 51397 0.67 0.998415
Target:  5'- gCGAuuuuGUACGAgACGACg---GCCGACGa -3'
miRNA:   3'- -GCU----UAUGCUgUGUUGgugaUGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 32457 0.67 0.997718
Target:  5'- gGAAUcacGCGugAUAugCAauugGCCGGCGa -3'
miRNA:   3'- gCUUA---UGCugUGUugGUga--UGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 107761 0.67 0.997718
Target:  5'- cCGAAga--ACGCGACCAaaGCCGACa -3'
miRNA:   3'- -GCUUaugcUGUGUUGGUgaUGGCUGc -5'
8566 5' -48.5 NC_002169.1 + 24710 0.67 0.997283
Target:  5'- aCGAAUuaACGACgACGACgACga-CGACGa -3'
miRNA:   3'- -GCUUA--UGCUG-UGUUGgUGaugGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 4445 0.68 0.996782
Target:  5'- aCGAcgACGACgACGACgGCgg-CGACGg -3'
miRNA:   3'- -GCUuaUGCUG-UGUUGgUGaugGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 37870 0.68 0.996782
Target:  5'- uCGGcauCGACACcACCGCcgaguaUGCCGACa -3'
miRNA:   3'- -GCUuauGCUGUGuUGGUG------AUGGCUGc -5'
8566 5' -48.5 NC_002169.1 + 51312 0.68 0.995549
Target:  5'- uGAGuUugGGCGCcGCCuCUAUCGACu -3'
miRNA:   3'- gCUU-AugCUGUGuUGGuGAUGGCUGc -5'
8566 5' -48.5 NC_002169.1 + 61426 0.68 0.995549
Target:  5'- aCGAcgACGACgACGACgAUUA-CGACGg -3'
miRNA:   3'- -GCUuaUGCUG-UGUUGgUGAUgGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 62268 0.68 0.994801
Target:  5'- aGAGUACGAuUGCAugCcgaGCUauaccGCCGACGa -3'
miRNA:   3'- gCUUAUGCU-GUGUugG---UGA-----UGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 39933 0.68 0.994801
Target:  5'- ----gGCGGCACucuacgaCGCUGCCGACc -3'
miRNA:   3'- gcuuaUGCUGUGuug----GUGAUGGCUGc -5'
8566 5' -48.5 NC_002169.1 + 69352 0.68 0.994801
Target:  5'- --uGUACGACACGuaGCCGucGCUGGCGu -3'
miRNA:   3'- gcuUAUGCUGUGU--UGGUgaUGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 129098 0.69 0.993001
Target:  5'- gCGAGUcCGugAUAGCCGCU-CgGACa -3'
miRNA:   3'- -GCUUAuGCugUGUUGGUGAuGgCUGc -5'
8566 5' -48.5 NC_002169.1 + 107326 0.69 0.991931
Target:  5'- cCGuGUACGACaACGGCgGC-AUCGACGa -3'
miRNA:   3'- -GCuUAUGCUG-UGUUGgUGaUGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 42733 0.69 0.991931
Target:  5'- gCGAGUACGuacuACGCAA-CACcACCGACc -3'
miRNA:   3'- -GCUUAUGC----UGUGUUgGUGaUGGCUGc -5'
8566 5' -48.5 NC_002169.1 + 116095 0.69 0.991931
Target:  5'- uCGAAUAUGuCGCGGCCGucucgcUUGCCGcGCGg -3'
miRNA:   3'- -GCUUAUGCuGUGUUGGU------GAUGGC-UGC- -5'
8566 5' -48.5 NC_002169.1 + 35532 0.69 0.990736
Target:  5'- aCGAAUACGACAaguuugucauCAACggacaaauguUACUGCgCGGCGg -3'
miRNA:   3'- -GCUUAUGCUGU----------GUUG----------GUGAUG-GCUGC- -5'
8566 5' -48.5 NC_002169.1 + 128112 0.69 0.990736
Target:  5'- ---uUACGACGCcGCCGCcGCCGcCGc -3'
miRNA:   3'- gcuuAUGCUGUGuUGGUGaUGGCuGC- -5'
8566 5' -48.5 NC_002169.1 + 100584 0.69 0.989405
Target:  5'- uGAuuUACGACACGugGCCuuuagcGCCGACGg -3'
miRNA:   3'- gCUu-AUGCUGUGU--UGGuga---UGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 124549 0.69 0.987929
Target:  5'- aCGAAgACGACAUAcUCACcAUCGACGc -3'
miRNA:   3'- -GCUUaUGCUGUGUuGGUGaUGGCUGC- -5'
8566 5' -48.5 NC_002169.1 + 105788 0.7 0.984506
Target:  5'- aCGAcgcaauauccGUACGAUACGA-CGCUAUCGACc -3'
miRNA:   3'- -GCU----------UAUGCUGUGUUgGUGAUGGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.