Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8567 | 3' | -54.6 | NC_002169.1 | + | 49814 | 0.66 | 0.900201 |
Target: 5'- ----gAGCGGCGUGUCGCUGUugaugAAUUUg -3' miRNA: 3'- caugaUUGCCGCGCAGCGGCG-----UUGAA- -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 22490 | 0.66 | 0.924544 |
Target: 5'- -aGCUcuACGGCGCgGUCGgCGCAGu-- -3' miRNA: 3'- caUGAu-UGCCGCG-CAGCgGCGUUgaa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 42791 | 0.66 | 0.924544 |
Target: 5'- cGUGCUAGCGcucgacacgcuGUGCGUagucaaaggcggCGCCGCGAUc- -3' miRNA: 3'- -CAUGAUUGC-----------CGCGCA------------GCGGCGUUGaa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 3606 | 0.66 | 0.900201 |
Target: 5'- -aAUUuuuGCGGCaaugGUGUCGUCGCAGCg- -3' miRNA: 3'- caUGAu--UGCCG----CGCAGCGGCGUUGaa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 2266 | 0.67 | 0.893494 |
Target: 5'- uGUACgauGCGGUGUGUUaUCGCGACa- -3' miRNA: 3'- -CAUGau-UGCCGCGCAGcGGCGUUGaa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 125572 | 0.67 | 0.856422 |
Target: 5'- ----cGGCGccuucGCGCGUCGCCGCcACUc -3' miRNA: 3'- caugaUUGC-----CGCGCAGCGGCGuUGAa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 95894 | 0.67 | 0.879358 |
Target: 5'- aUACUAAUGGCGacgacgauaGUCGUaCGUGACUUg -3' miRNA: 3'- cAUGAUUGCCGCg--------CAGCG-GCGUUGAA- -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 57416 | 0.67 | 0.886546 |
Target: 5'- -cACUA---GCGCGUCGUCGguGCUUa -3' miRNA: 3'- caUGAUugcCGCGCAGCGGCguUGAA- -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 25688 | 0.68 | 0.831555 |
Target: 5'- -aGC-GACGGCgaaccgccggGCGUCGCCGcCAACg- -3' miRNA: 3'- caUGaUUGCCG----------CGCAGCGGC-GUUGaa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 34664 | 0.68 | 0.822871 |
Target: 5'- -gGC-GACGGCGcCGcCGCCGCAAg-- -3' miRNA: 3'- caUGaUUGCCGC-GCaGCGGCGUUgaa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 30476 | 0.68 | 0.831555 |
Target: 5'- -aACgugAGCGGCgGCGUCGUCGaCAAUa- -3' miRNA: 3'- caUGa--UUGCCG-CGCAGCGGC-GUUGaa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 8340 | 0.69 | 0.786389 |
Target: 5'- --uUUGACGGCaucUCGCCGCAGCUg -3' miRNA: 3'- cauGAUUGCCGcgcAGCGGCGUUGAa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 102858 | 0.69 | 0.808599 |
Target: 5'- aGUAgUAGCGGCGaCGuaacugccuccucugUCGCCGUGGCa- -3' miRNA: 3'- -CAUgAUUGCCGC-GC---------------AGCGGCGUUGaa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 55862 | 0.69 | 0.767229 |
Target: 5'- --cCUGACGGCGUcuaCGCCGCAgACUUu -3' miRNA: 3'- cauGAUUGCCGCGca-GCGGCGU-UGAA- -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 34508 | 0.69 | 0.767229 |
Target: 5'- uUGCggcGGCGGCGcCGUCGCCGauauuGACUc -3' miRNA: 3'- cAUGa--UUGCCGC-GCAGCGGCg----UUGAa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 15496 | 0.7 | 0.707017 |
Target: 5'- -gACcAGCGGCGCGaugagcugUGCCGCGGCa- -3' miRNA: 3'- caUGaUUGCCGCGCa-------GCGGCGUUGaa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 107272 | 0.7 | 0.73756 |
Target: 5'- ---aUGACGGCGuCGUCGCCauaauaauguGCAGCa- -3' miRNA: 3'- caugAUUGCCGC-GCAGCGG----------CGUUGaa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 100722 | 0.72 | 0.623319 |
Target: 5'- -aACUcGACGGCGC-UCGCCGgGACg- -3' miRNA: 3'- caUGA-UUGCCGCGcAGCGGCgUUGaa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 77924 | 0.73 | 0.581348 |
Target: 5'- gGUGCUGcaccaucgcguGCcGCGCGUCGCCGaCGACg- -3' miRNA: 3'- -CAUGAU-----------UGcCGCGCAGCGGC-GUUGaa -5' |
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8567 | 3' | -54.6 | NC_002169.1 | + | 1233 | 0.78 | 0.315863 |
Target: 5'- uUGC-AGCGGCGCGUCGCCGUcgAACc- -3' miRNA: 3'- cAUGaUUGCCGCGCAGCGGCG--UUGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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