miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8569 3' -39.4 NC_002169.1 + 10935 0.97 0.402757
Target:  5'- cUUUGGUACACGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 11442 0.96 0.443808
Target:  5'- -aUAGUACACGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaAUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 11171 0.95 0.498247
Target:  5'- --aAAUGCACGAUCUUUGCUUUcGUCg -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 119602 0.95 0.498247
Target:  5'- --cAGUACACGAUCUUUGCUUUcGUCg -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 105501 0.93 0.602574
Target:  5'- --cAGUACACGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 52784 0.92 0.614452
Target:  5'- --cGGUACACGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 10817 0.88 0.828362
Target:  5'- -cUAGUACACGAUgUUUGCUUUcGUCg -3'
miRNA:   3'- aaAUUAUGUGCUAgAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 104956 0.88 0.808323
Target:  5'- --cAGUACAUGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 105407 0.88 0.797973
Target:  5'- cUUUAAUACACGAUCUUUGCUUUc--- -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAacag -5'
8569 3' -39.4 NC_002169.1 + 105091 0.89 0.754685
Target:  5'- uUUUAGUACACGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 104767 0.9 0.709059
Target:  5'- --cAAUACAUGAUCUUUGCUUUcGUCa -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 53123 0.9 0.709059
Target:  5'- --cAGUACAUGAUCUUUGCUUUcGUCg -3'
miRNA:   3'- aaaUUAUGUGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 105601 0.76 0.999478
Target:  5'- ---cAUACACaAUCUUUGCUUUcGUCg -3'
miRNA:   3'- aaauUAUGUGcUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 105026 0.75 0.999861
Target:  5'- ----cUACuCGAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaauuAUGuGCUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 29673 0.74 0.999924
Target:  5'- -----aACGCGAUCggUUGCcUUUUGUCu -3'
miRNA:   3'- aaauuaUGUGCUAGa-AACG-AAAACAG- -5'
8569 3' -39.4 NC_002169.1 + 52978 0.74 0.999924
Target:  5'- uUUUAGUACACcAUCUUUGCUUUcaUCg -3'
miRNA:   3'- -AAAUUAUGUGcUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 11636 0.72 0.999999
Target:  5'- -cUAGUACAUGAUgUUUGCUUUcaUCg -3'
miRNA:   3'- aaAUUAUGUGCUAgAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 105145 0.71 1
Target:  5'- -----cACAUGAUCUUUGCUUUcaUCg -3'
miRNA:   3'- aaauuaUGUGCUAGAAACGAAAacAG- -5'
8569 3' -39.4 NC_002169.1 + 42447 0.69 1
Target:  5'- -----aACACaAUCUUUGCUUUcGUCc -3'
miRNA:   3'- aaauuaUGUGcUAGAAACGAAAaCAG- -5'
8569 3' -39.4 NC_002169.1 + 105400 1.01 0.287135
Target:  5'- cUUUAGUACACGAUCUUUGCUUUcGUCg -3'
miRNA:   3'- -AAAUUAUGUGCUAGAAACGAAAaCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.