miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
857 3' -59.9 NC_000898.1 + 9027 0.66 0.802645
Target:  5'- cCGGGGGGGGggGGCccGGGcgcGGGGCGc -3'
miRNA:   3'- -GCUCCCCCCa-CUG--CCUcuuCCCUGCa -5'
857 3' -59.9 NC_000898.1 + 618 0.67 0.7208
Target:  5'- gCGGGuuGGGUGAUGGuGAGGGGuuGa -3'
miRNA:   3'- -GCUCccCCCACUGCCuCUUCCCugCa -5'
857 3' -59.9 NC_000898.1 + 153786 0.67 0.7208
Target:  5'- gCGGGuuGGGUGAUGGuGAGGGGuuGa -3'
miRNA:   3'- -GCUCccCCCACUGCCuCUUCCCugCa -5'
857 3' -59.9 NC_000898.1 + 25865 0.67 0.719848
Target:  5'- gCGGGGGGGaGUauggGACGGuAGAaguacuguggcugGGGGAUGc -3'
miRNA:   3'- -GCUCCCCC-CA----CUGCC-UCU-------------UCCCUGCa -5'
857 3' -59.9 NC_000898.1 + 156944 0.68 0.643079
Target:  5'- uCGAGuGGGGGUGAgaGGGacGGuGGACGg -3'
miRNA:   3'- -GCUC-CCCCCACUg-CCUcuUC-CCUGCa -5'
857 3' -59.9 NC_000898.1 + 3776 0.68 0.643079
Target:  5'- uCGAGuGGGGGUGAgaGGGacGGuGGACGg -3'
miRNA:   3'- -GCUC-CCCCCACUg-CCUcuUC-CCUGCa -5'
857 3' -59.9 NC_000898.1 + 2835 0.69 0.6303
Target:  5'- aGAGGGaGaaacggacacgcgcGGUGgACGGcGAGGGGACGg -3'
miRNA:   3'- gCUCCC-C--------------CCAC-UGCCuCUUCCCUGCa -5'
857 3' -59.9 NC_000898.1 + 156003 0.69 0.6303
Target:  5'- aGAGGGaGaaacggacacgcgcGGUGgACGGcGAGGGGACGg -3'
miRNA:   3'- gCUCCC-C--------------CCAC-UGCCuCUUCCCUGCa -5'
857 3' -59.9 NC_000898.1 + 2928 0.69 0.623418
Target:  5'- aCGAGGGagagacGGGagagGGCGGAGAcaacGGGGAgGg -3'
miRNA:   3'- -GCUCCC------CCCa---CUGCCUCU----UCCCUgCa -5'
857 3' -59.9 NC_000898.1 + 156096 0.69 0.623418
Target:  5'- aCGAGGGagagacGGGagagGGCGGAGAcaacGGGGAgGg -3'
miRNA:   3'- -GCUCCC------CCCa---CUGCCUCU----UCCCUgCa -5'
857 3' -59.9 NC_000898.1 + 157014 0.69 0.62047
Target:  5'- cCGAGGGGGcGUGGgaggagcguugccgUGGAGGcguucgGGGGACu- -3'
miRNA:   3'- -GCUCCCCC-CACU--------------GCCUCU------UCCCUGca -5'
857 3' -59.9 NC_000898.1 + 3846 0.69 0.62047
Target:  5'- cCGAGGGGGcGUGGgaggagcguugccgUGGAGGcguucgGGGGACu- -3'
miRNA:   3'- -GCUCCCCC-CACU--------------GCCUCU------UCCCUGca -5'
857 3' -59.9 NC_000898.1 + 663 0.7 0.564791
Target:  5'- aGAGGugacGGuagcGGUGGCGGuGGggGGGAUGUg -3'
miRNA:   3'- gCUCC----CC----CCACUGCC-UCuuCCCUGCA- -5'
857 3' -59.9 NC_000898.1 + 153831 0.7 0.564791
Target:  5'- aGAGGugacGGuagcGGUGGCGGuGGggGGGAUGUg -3'
miRNA:   3'- gCUCC----CC----CCACUGCC-UCuuCCCUGCA- -5'
857 3' -59.9 NC_000898.1 + 3366 0.72 0.456741
Target:  5'- gGuGGGGGcGUGuCGGAccucggguccuggacGGAGGGGCGUg -3'
miRNA:   3'- gCuCCCCC-CACuGCCU---------------CUUCCCUGCA- -5'
857 3' -59.9 NC_000898.1 + 156533 0.72 0.456741
Target:  5'- gGuGGGGGcGUGuCGGAccucggguccuggacGGAGGGGCGUg -3'
miRNA:   3'- gCuCCCCC-CACuGCCU---------------CUUCCCUGCA- -5'
857 3' -59.9 NC_000898.1 + 8189 0.75 0.291357
Target:  5'- gGAGGGGGGUguugugguaGAUGGgguaGGGAGGGAUGa -3'
miRNA:   3'- gCUCCCCCCA---------CUGCC----UCUUCCCUGCa -5'
857 3' -59.9 NC_000898.1 + 161356 0.75 0.291357
Target:  5'- gGAGGGGGGUguugugguaGAUGGgguaGGGAGGGAUGa -3'
miRNA:   3'- gCUCCCCCCA---------CUGCC----UCUUCCCUGCa -5'
857 3' -59.9 NC_000898.1 + 3874 0.77 0.226386
Target:  5'- cCGGGGaGGGGgaugGAgGGAGggGGGACc- -3'
miRNA:   3'- -GCUCC-CCCCa---CUgCCUCuuCCCUGca -5'
857 3' -59.9 NC_000898.1 + 157042 0.77 0.226386
Target:  5'- cCGGGGaGGGGgaugGAgGGAGggGGGACc- -3'
miRNA:   3'- -GCUCC-CCCCa---CUgCCUCuuCCCUGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.