miRNA display CGI


Results 21 - 37 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8571 5' -44.7 NC_002169.1 + 9255 0.68 0.999805
Target:  5'- aGCAacgacaACAAGUGuauuguCGUCGUCGUCGuuGUg -3'
miRNA:   3'- -CGUg-----UGUUCAU------GUAGCAGUAGCuuUA- -5'
8571 5' -44.7 NC_002169.1 + 119927 0.69 0.999676
Target:  5'- cGUGCAauuGUGCAU-GUCGUCGAAAUu -3'
miRNA:   3'- -CGUGUguuCAUGUAgCAGUAGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 96395 0.69 0.999479
Target:  5'- gGCGCGCGAGUgGCAgaaUCGU--UCGAGAg -3'
miRNA:   3'- -CGUGUGUUCA-UGU---AGCAguAGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 75694 0.7 0.999347
Target:  5'- -aACACAauAGUAuCGUCGUCGUCGu--- -3'
miRNA:   3'- cgUGUGU--UCAU-GUAGCAGUAGCuuua -5'
8571 5' -44.7 NC_002169.1 + 111860 0.7 0.999347
Target:  5'- cCAgAgGAGUGCGU-GUCGUCGAAAa -3'
miRNA:   3'- cGUgUgUUCAUGUAgCAGUAGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 77856 0.7 0.998759
Target:  5'- gGCACGCAcGUAUucgagGUCG-CGUCGAAGc -3'
miRNA:   3'- -CGUGUGUuCAUG-----UAGCaGUAGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 85758 0.71 0.998156
Target:  5'- -gGC-CGAugGCAUCGUCGUCGAAAa -3'
miRNA:   3'- cgUGuGUUcaUGUAGCAGUAGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 26710 0.71 0.998156
Target:  5'- cCACcCAAGUACaAUCuGUCGUCGAGu- -3'
miRNA:   3'- cGUGuGUUCAUG-UAG-CAGUAGCUUua -5'
8571 5' -44.7 NC_002169.1 + 98790 0.71 0.998047
Target:  5'- uUAUugGGGUAacauuuaaaaacacCGUCGUCGUCGAGGUa -3'
miRNA:   3'- cGUGugUUCAU--------------GUAGCAGUAGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 133802 0.71 0.997772
Target:  5'- ---aACAAGUGCGUCGaCGUCGAc-- -3'
miRNA:   3'- cgugUGUUCAUGUAGCaGUAGCUuua -5'
8571 5' -44.7 NC_002169.1 + 110713 0.71 0.997324
Target:  5'- aCACACuAGUAUAUU-UCAUCGAAAUa -3'
miRNA:   3'- cGUGUGuUCAUGUAGcAGUAGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 36213 0.72 0.994715
Target:  5'- gGCGCACAuggACGUuuUGUCGUCGGGAUc -3'
miRNA:   3'- -CGUGUGUucaUGUA--GCAGUAGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 43967 0.74 0.985517
Target:  5'- gGCACGuuuCGA--ACGUCGUCGUCGAAAg -3'
miRNA:   3'- -CGUGU---GUUcaUGUAGCAGUAGCUUUa -5'
8571 5' -44.7 NC_002169.1 + 52681 0.74 0.981392
Target:  5'- ---aACAAGaUACGUUGUCGUCGAAAUu -3'
miRNA:   3'- cgugUGUUC-AUGUAGCAGUAGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 117693 0.76 0.955904
Target:  5'- uGCGCGCcgcuccCGUCGUCGUCGAAAUg -3'
miRNA:   3'- -CGUGUGuucau-GUAGCAGUAGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 62144 0.78 0.899814
Target:  5'- aCACGCuGAGcaaUACGUCGUCGUCGGAAUu -3'
miRNA:   3'- cGUGUG-UUC---AUGUAGCAGUAGCUUUA- -5'
8571 5' -44.7 NC_002169.1 + 113682 1.09 0.031632
Target:  5'- cGCACACAAGUACAUCGUCAUCGAAAUc -3'
miRNA:   3'- -CGUGUGUUCAUGUAGCAGUAGCUUUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.