miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8572 3' -43.5 NC_002169.1 + 27548 0.66 0.999999
Target:  5'- ----uUGCACGAUUg--GCgcgUCGUCa -3'
miRNA:   3'- aaaucAUGUGCUAGaaaCGaa-AGCAG- -5'
8572 3' -43.5 NC_002169.1 + 29673 0.67 0.999997
Target:  5'- -----aACGCGAUCggUUGCcUUUUGUCu -3'
miRNA:   3'- aaaucaUGUGCUAGa-AACG-AAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 31417 0.7 0.999623
Target:  5'- ---cGUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- aaauCAUGUGCUAGAa-----ACgAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 41772 0.82 0.809972
Target:  5'- ----aUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGuGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 41873 0.81 0.8197
Target:  5'- ----aUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaucAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 41999 0.91 0.389024
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 42065 0.97 0.175927
Target:  5'- aUUUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUCAUGuGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 42188 0.91 0.389024
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 42192 1.06 0.059272
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 42255 0.93 0.302888
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 42378 0.76 0.966621
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucaUGUGcUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 42453 0.79 0.910487
Target:  5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCA---UGUGcUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 52662 0.88 0.52227
Target:  5'- uUUUAGUACACGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUGCUAgAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 52784 1.03 0.090181
Target:  5'- --cGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 52857 1.01 0.107684
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 52898 0.78 0.929336
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAAUCAUGUGcUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 52978 0.83 0.725897
Target:  5'- uUUUAGUACACcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUCAUGUGcUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 53042 0.9 0.398476
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGUGCUAGAAACGAAAGcAG- -5'
8572 3' -43.5 NC_002169.1 + 53123 1.01 0.117589
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUCAUGUGCUAGAAACGAAAGCAG- -5'
8572 3' -43.5 NC_002169.1 + 53233 0.88 0.48972
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucAUGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.